Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10700	PS417_10705	PS417_10710	PS417_10715	PS417_10720
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-0.7	-0.5	-5.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.0	+0.1	-0.6	-5.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.3	+1.3	-0.2	-5.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	-0.2	-1.1	+3.6
soil	soil sample 2; outgrowth in LB	-0.4	-0.3	-0.1	-0.7	+4.9
soil	soil sample 5; outgrowth in LB	-0.1	+0.2	-1.4	-1.3	+6.5
soil	soil sample 7; outgrowth in LB	-0.1	-0.3	-0.8	-0.7	+5.8
seeds	Growth on radish seeds for 72 hours	-0.1	+0.2	-0.6	+1.4	+3.4
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	-0.4	+0.3	-0.0	+4.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.4	+1.1	+0.4	+3.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	+0.2	+0.2	+4.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.3	-0.4	-0.7	+5.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.3	+0.1	-0.6	+5.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.6	-0.2	+4.3
stress	Gentamicin 0.008 mg/ml	+0.3	+0.1	+0.1	+0.1	+4.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.0	+0.3	+0.4	+4.4
soil	soil sample 8; outgrowth in LB	-0.1	-0.2	-0.0	-0.6	+6.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.0	-0.4	-0.6	+6.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.1	-0.5	-0.1	+6.3
soil	soil sample 4; outgrowth in LB	+0.0	-0.3	-0.3	-1.2	+7.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.2	-1.0	-0.8	+8.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.0	-0.3	+0.0	-0.8	+7.4
soil	soil sample 6; outgrowth in LB	-0.1	+0.0	-0.3	-0.7	+7.4
soil	soil sample 3; outgrowth in LB	-0.8	+0.3	-0.3	-0.7	+7.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	+0.0	-0.2	+6.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	-0.0	-0.9	-0.9	+8.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.1	-0.4	-0.1	+7.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.2	+0.1	+0.1	+6.9
root	root sample 6; outgrowth in LB	-0.2	-0.7	+0.4	-0.3	+8.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.7	-0.3	+0.9	+8.4