Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10690 and PS417_10695 overlap by 11 nucleotidesPS417_10695 and PS417_10700 are separated by 87 nucleotidesPS417_10700 and PS417_10705 are separated by 19 nucleotidesPS417_10705 and PS417_10710 are separated by 612 nucleotides PS417_10690: PS417_10690 - acyl-CoA synthetase, at 2,283,223 to 2,285,331 _10690 PS417_10695: PS417_10695 - decarboxylase, at 2,285,321 to 2,286,928 _10695 PS417_10700: PS417_10700 - NAD(P)H dehydrogenase, at 2,287,016 to 2,287,717 _10700 PS417_10705: PS417_10705 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,287,737 to 2,288,816 _10705 PS417_10710: PS417_10710 - GNAT family acetyltransferase, at 2,289,429 to 2,289,860 _10710
Group Condition PS417_10690 PS417_10695 PS417_10700 PS417_10705 PS417_10710
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.1 -0.3 -0.5 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.8 +0.2 -0.4 -0.5
soil soil sample 3; outgrowth in LB -0.8 -0.4 -0.8 +0.3 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB -0.6 -0.6 +0.1 -0.7 -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 +0.1 -0.3 -0.2 -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 +0.0 -0.4 -0.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -1.1 -0.4 -0.2 +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.9 -0.1 -0.4 -0.3
phage P. simiae OR1 MOI 0.1 -0.3 -1.1 -0.4 -0.2 +0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.1 +0.1 -0.6 -0.9
solid stress Fraxetin 3 mM; solid stress -1.0 -0.4 -0.1 +0.5 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 +0.4 +0.2 -0.0 -0.9
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.6 +0.9 -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +0.5 +0.3 -0.4 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -1.2 +0.1 -0.3 +0.6
seeds Growth on radish seeds for 72 hours -0.6 -0.3 -0.6 -0.4 +1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 +0.3 -0.2 -0.5 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.9 +0.0 -0.4 +1.1
soil soil sample 5; outgrowth in LB +0.6 +0.8 -0.1 +0.2 -1.4
phage P. simiae Grant Run MOI 10 +0.8 -0.4 -0.7 +0.3 +0.1
phage JP1 MOI 1 +0.3 -1.0 +0.3 -0.0 +0.5
carbon source L-Valine (C) +0.6 +0.0 -0.4 +0.5 -0.5
agar plate interaction control Taped volatile agar plate with no fungus +0.5 -1.0 -0.0 +0.1 +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB +0.1 -0.5 -0.2 -0.1 +1.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.7 -0.3 -0.7 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.8 +0.3 -0.1 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.1 +0.1 +0.1 -0.6
supernatant control Vogels_fungal_media 0.1X -0.1 +0.3 -0.3 -0.0 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.5 +0.1 -0.1 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.4 -0.0 +0.3 +1.3
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