Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10665	PS417_10670	PS417_10675	PS417_10680	PS417_10685
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.4	-1.6	-0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.1	-0.7	-0.6	-1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.3	-1.9	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.2	-2.2	-0.3	+0.4
phage	P. simiae OR1 MOI 0.1	-0.4	+0.4	-1.6	-1.4	+0.1
carbon source	L-Valine (C)	-0.3	+0.6	-1.5	-0.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.3	-2.1	+0.1	+0.3
nophagecontrol	Only library	-0.5	+0.1	-1.8	-0.6	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.6	-1.0	+0.1	-0.6
root	root sample 6; outgrowth in LB	-0.7	-0.2	-1.8	+0.7	+0.1
phage	Wcs_1	+0.9	-0.3	-0.9	-0.4	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	-1.9	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.2	-0.9	-1.3	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-1.7	+0.2	+0.5	+0.7	-0.1
phage	JP1 MOI 0.1	-0.7	+0.5	-1.5	+0.3	+1.0
stress	Gentamicin 0.008 mg/ml	+0.5	-0.6	-1.3	+0.6	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.9	+0.4	-0.5	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.2	+1.1	-0.4	+0.7
phage	P. simiae OR Antrim MOI 0.1	-0.6	+0.3	+0.9	-0.6	+0.5
phage	P. simiae ORA MOI 0.1	+0.8	-0.4	+1.1	-0.7	-0.1
phage	P. simiae OR Antrim MOI 1	+0.7	-0.3	+1.4	-0.6	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.4	+1.2	-0.4	+0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.7	+0.4	-1.3	+1.3	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	-0.2	+0.6	+1.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.0	-0.1	+0.5	-0.9	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.3	+1.3	+1.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	+1.4	+0.2	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.5	+3.1	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.3	+1.9	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.3	+1.2	+0.9	+0.4