Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10655	PS417_10660	PS417_10665	PS417_10670	PS417_10675
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.0	-0.4	-0.3	-2.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.0	-0.5	-0.3	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.0	-1.0	+0.2	-2.2
carbon source	Carbon source D-Mannitol 2.5 mM	-0.4	+0.2	-0.6	-0.4	-1.4
motility	inner cut, LB soft agar motility assay	-1.1	-0.2	-0.4	+0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	-0.1	+0.4	-1.9
root	root sample 6; outgrowth in LB	+0.5	-0.0	-0.7	-0.2	-1.8
nophagecontrol	Only library	+0.1	+0.1	-0.5	+0.1	-1.8
phage	P. simiae OR1 MOI 0.1	-0.3	-0.0	-0.4	+0.4	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.3	+0.2	-0.6	+0.4	-0.6
seeds	Growth on radish seeds for 24 hours	+0.5	-0.1	-0.4	-0.5	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-0.9	+0.6	-1.0
phage	JP1 MOI 0.1	+0.0	+0.1	-0.7	+0.5	-1.5
carbon source	L-Valine (C)	-0.4	+0.1	-0.3	+0.6	-1.5
stress	Gentamicin 0.008 mg/ml	+0.2	-0.1	+0.5	-0.6	-1.3
supernatant control	Vogels_fungal_media 0.1X	+0.6	+0.1	-0.0	+0.1	-2.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	+0.2	-1.7	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.1	-0.5	+0.3	+0.6
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	+0.1	+0.7	+0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.0	+0.2	+1.2	-0.9
phage	Wcs_1	+0.5	+0.0	+0.9	-0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	-0.2	-0.6	+1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.2	-0.8	+0.4	+1.2
phage	P. simiae ORA MOI 0.1	-0.6	-0.0	+0.8	-0.4	+1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	-0.0	-0.7	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.5	-0.0	+0.3	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.1	+0.0	-0.3	+1.9
phage	P. simiae OR Antrim MOI 1	+0.3	+0.1	+0.7	-0.3	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.0	-0.4	-0.5	+3.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	+2.0	-0.1	+0.5