Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2082 and GFF2083 are separated by 9 nucleotidesGFF2083 and GFF2084 overlap by 4 nucleotidesGFF2084 and GFF2085 overlap by 4 nucleotidesGFF2085 and GFF2086 overlap by 4 nucleotides GFF2082 - transcriptional regulator, Crp/Fnr family, at 130,719 to 131,351 GFF2082 GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963 GFF2083 GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913 GFF2084 GFF2085 - Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 132,910 to 133,638 GFF2085 GFF2086 - hypothetical protein, at 133,635 to 134,084 GFF2086
Group Condition GFF2082 GFF2083 GFF2084 GFF2085 GFF2086
complex community Community=Locust bean gum; Passage=4 -0.2 +0.5 -0.5 +0.1 -1.6
complex community Community=Locust bean gum; Passage=4 -0.4 +0.8 -0.1 +0.2 -2.2
complex community Community=guar; Passage=4 -0.1 +0.9 -0.3 -0.5 -1.7
complex community Community=arabino-guar; Passage=4 +0.1 -0.3 +0.1 -0.8 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.2 -0.2 -0.3 -0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.3 +0.1 -0.3 -0.6
phage phage_bap4 -0.2 -0.4 -0.1 -0.1 -0.4
no phage control no phage control -0.2 -0.2 -0.1 -0.4 -0.3
complex community Community=Locust bean gum; Passage=1 -0.1 +0.2 +0.1 -0.4 -0.6
complex community Community=Locust bean gum; Passage=4 -1.1 -0.8 -0.1 +0.3 +1.0
complex community Community=Locust bean gum; Passage=4 -0.1 -0.2 +0.2 -0.4 -0.2
complex community Community=arabino-guar; Passage=4 -0.1 +0.3 -0.1 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.0 -0.3 -0.2 +0.4
phage phage_bap4 +0.2 -0.2 -0.0 -0.4 +0.3
complex community Community=guar; Passage=4 +0.1 -0.9 +0.6 -0.5 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.0 -0.1 -0.4 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.3 -0.1 -0.1 +0.6
complex community Community=Kojac gum; Passage=4 -0.5 +1.0 +0.5 -0.6 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.0 -0.0 -0.2 +0.7
phage phage_bap4 +0.1 -0.3 -0.2 +0.0 +0.7
complex community Community=Kojac gum; Passage=1 -0.2 -0.2 +0.2 +0.2 +0.3
complex community Community=guar; Passage=4 -0.3 +0.7 +0.2 -0.7 +0.4
phage phage_bap4 +0.1 -0.1 +0.0 -0.2 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.1 -0.0 -0.2 +0.6
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.3 +0.1 -0.1 +0.9
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.2 -0.2 +0.1 +0.9
complex community Community=arabino-guar; Passage=4 -0.2 +0.0 -0.3 +0.1 +0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.0 -0.1 -0.0 +1.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.1 -0.0 +0.1 +1.1
complex community Community=arabino-guar; Passage=4 +0.0 +1.0 -0.0 +0.0 +0.1
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