Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10605	PS417_10615	PS417_10620	PS417_10625	PS417_10630
soil	soil sample 6; outgrowth in LB	+0.0	-0.7	-0.1	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-1.0	+0.1	-0.2	+0.1
stress	methylglyoxal 0.032 vol%	-0.3	-0.4	-0.3	-0.2	+0.2
phage	Wcs_1	-0.2	-0.9	+0.0	-0.0	+0.1
carbon source	L-Valine (C)	+0.4	-1.2	-0.2	+0.0	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-0.4	-0.2	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.8	-0.2	+0.1	+0.0
soil	soil sample 7; outgrowth in LB	-0.5	+0.3	-0.2	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.0	+0.3	-0.3	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.1	-0.7	-0.1	+0.1	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.8	-0.0	-0.4	+0.2
seeds	Growth on radish seeds for 72 hours	-0.2	-0.4	+0.5	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.7	-0.4	-0.3	+0.1
carbon source	Carbon source D-Mannitol 5 mM	+0.3	-0.3	+0.2	-0.2	-0.1
phage	P. simiae OR Antrim MOI 10	+0.3	-0.3	+0.1	-0.3	+0.2
root	root sample 6; outgrowth in LB	+0.1	+0.7	-0.4	-0.1	-0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	-0.6	-0.0	+0.4	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	-0.4	+0.1	-0.0	-0.1
phage	JP1 MOI 1	+0.3	+0.6	-0.1	-0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.8	+0.1	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.4	-0.0	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.7	+0.2	-0.3	+0.0
carbon source	L-Valine (C)	-0.1	+0.6	+0.0	-0.3	+0.2
stress	LB_noSalt with Chloride 1100 mM	-0.4	+0.4	+0.0	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.6	+0.4	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.4	-0.1	-0.1	-0.1
stress	LB_noSalt with Chloride 500 mM	-0.1	+0.4	-0.1	+0.3	+0.2
seeds	Growth on radish seeds for 72 hours	+0.5	+0.7	+0.3	-0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.5	+0.0	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.9	-0.2	+0.3	+0.7