Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10570	PS417_10575	PS417_10580	PS417_10585	PS417_10590
root	root sample 6; outgrowth in LB	-0.1	-0.8	-0.6	-0.5	N.D.
phage	P. simiae Grant Run MOI 0.1	-0.1	-1.3	-0.2	-0.1	N.D.
stress	methylglyoxal 0.032 vol%	-0.1	-0.9	-0.4	-0.3	N.D.
soil	soil sample 5; outgrowth in LB	-0.1	-0.7	-0.6	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.1	-0.3	-0.1	N.D.
phage	Wcs_1	-0.1	-1.4	+0.2	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.0	+0.2	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.1	-1.4	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.9	-0.3	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.9	-0.2	+0.5	N.D.
stress	Phosphomycin 0.001 mg/ml	-0.1	-0.7	+0.4	-0.3	N.D.
motility	outer cut, LB soft agar motility assay	-0.1	-1.0	+0.4	+0.0	N.D.
carbon source	L-Valine (C)	-0.4	-0.6	+0.4	-0.2	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.5	-0.6	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.1	-1.0	+0.1	N.D.
seeds	Growth on radish seeds for 72 hours	+0.1	-0.8	+0.2	+0.3	N.D.
phage	P. simiae OR Antrim MOI 0.1	+0.2	+0.3	-0.7	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	-0.6	+0.1	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+1.3	-1.0	+0.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+1.0	-0.3	-0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.4	+0.3	-0.7	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.9	-0.4	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.6	+0.3	+1.2	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+1.1	-0.4	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.7	-0.2	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.8	-0.2	+0.5	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.1	+1.1	+0.2	+0.3	N.D.
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.0	+1.0	+0.3	+0.4	N.D.
phage	JP1 MOI 0.1	-0.0	+1.0	+0.5	+0.2	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	-0.0	+1.7	+0.1	N.D.