Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_10555 and PS417_10560 are separated by 74 nucleotidesPS417_10560 and PS417_10565 are separated by 128 nucleotidesPS417_10565 and PS417_10570 are separated by 5 nucleotidesPS417_10570 and PS417_10575 are separated by 148 nucleotides PS417_10555: PS417_10555 - major facilitator transporter, at 2,252,006 to 2,253,631 _10555 PS417_10560: PS417_10560 - choline dehydrogenase, at 2,253,706 to 2,255,352 _10560 PS417_10565: PS417_10565 - LysR family transcriptional regulator, at 2,255,481 to 2,256,374 _10565 PS417_10570: PS417_10570 - cysteine protease, at 2,256,380 to 2,258,239 _10570 PS417_10575: PS417_10575 - DNA alkylation repair protein, at 2,258,388 to 2,259,488 _10575
Group Condition PS417_10555 PS417_10560 PS417_10565 PS417_10570 PS417_10575
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.4 -0.3 -0.2 -0.2 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.0 -0.2 -0.4 -1.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.3 -0.6 -0.2 -0.6
phage P. simiae Grant Run MOI 0.1 -0.0 +0.0 -0.3 -0.1 -1.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.3 +0.1 -0.2 -1.1
phage P. simiae OR Antrim MOI 10 -0.1 +0.2 -0.4 -0.1 -1.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -1.0 -0.6 -0.1 +0.3
carbon source L-Valine (C) -0.3 +0.2 -0.3 -0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.3 -0.3 -0.0 -0.7
phage Wcs_1 +0.3 +0.1 +0.1 -0.1 -1.4
motility inner cut, LB soft agar motility assay +0.2 -0.2 +0.1 -0.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 -0.3 +0.8 -0.1 -0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.1 +1.3 -0.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.3 +0.2 +0.3 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.3 -0.2 +0.2 +0.3 -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.5 +0.1 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.2 +0.6 +0.1 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -0.1 +0.2 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.3 -0.3 +0.1 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.2 -0.1 +0.2 +0.7
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 -0.3 +0.1 -0.1 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 +0.2 +0.7 +0.2 -0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 -0.3 -0.1 +0.1 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.0 +1.2 -0.1 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -0.0 +0.4 +0.0 +1.0
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 -0.1 +0.1 +0.1 +1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.4 +0.4 -0.2 +1.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.8 +0.6 -0.1 +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.8 +0.9 -0.0 +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.3 +1.2 +0.1 -0.5
remove
PS417_10555
plot		 remove
PS417_10560
plot		 remove
PS417_10565		 remove
PS417_10570
plot		 remove
PS417_10575
plot