Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10550 and PS417_10555 are separated by 227 nucleotidesPS417_10555 and PS417_10560 are separated by 74 nucleotidesPS417_10560 and PS417_10565 are separated by 128 nucleotidesPS417_10565 and PS417_10570 are separated by 5 nucleotides PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778 _10550 PS417_10555: PS417_10555 - major facilitator transporter, at 2,252,006 to 2,253,631 _10555 PS417_10560: PS417_10560 - choline dehydrogenase, at 2,253,706 to 2,255,352 _10560 PS417_10565: PS417_10565 - LysR family transcriptional regulator, at 2,255,481 to 2,256,374 _10565 PS417_10570: PS417_10570 - cysteine protease, at 2,256,380 to 2,258,239 _10570
Group Condition PS417_10550 PS417_10555 PS417_10560 PS417_10565 PS417_10570
carbon source L-Valine (C) -0.3 -0.4 -0.4 -0.3 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.1 -0.3 -0.6 -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.3 -0.4 -0.3 -0.2 -0.2
carbon source L-Valine (C) -0.6 -0.3 +0.2 -0.3 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +0.1 -1.0 -0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.3 -0.1 -0.1 +0.2
nophagecontrol Only library -0.5 +0.1 +0.1 -0.4 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 +0.1 +0.2 -0.6 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 +0.2 -0.1 +0.1 +0.1
root root sample 6; outgrowth in LB +0.6 -0.2 -0.2 -0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +0.2 -0.5 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.0 +0.3 +0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.1 +0.3 -0.3 +0.1
soil soil sample 7; outgrowth in LB +0.3 -0.5 -0.0 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.5 +0.2 +0.4 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.3 +0.4 +0.4 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.1 +0.5 +0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.2 +0.2 +0.6 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 -0.1 +1.3 -0.2
phage P. simiae OR1 MOI 0.1 +0.7 -0.0 +0.3 -0.3 +0.1
seeds Growth on radish seeds for 72 hours +1.0 -0.2 -0.1 -0.0 +0.1
seeds Growth on radish seeds for 24 hours +0.0 +0.5 +0.4 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.1 -0.0 +1.2 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.2 +0.6 +0.3 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +0.5 +0.1 +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.2 -0.3 +0.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.0 +0.2 +0.7 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.0 +0.8 +0.9 -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.3 +0.8 +0.6 -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 +1.3 +1.2 +0.1
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