Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10540	PS417_10545	PS417_10550	PS417_10555	PS417_10560
carbon source	L-Valine (C)	-1.0	N.D.	-0.3	-0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	N.D.	-0.6	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	N.D.	-0.3	-0.1	-0.3
carbon source	L-Valine (C)	-0.7	N.D.	-0.6	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	N.D.	-0.8	+0.2	-0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.2	N.D.	-0.3	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	N.D.	-0.6	+0.0	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	N.D.	-0.3	-0.5	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	N.D.	+0.3	+0.1	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	-0.5	-0.1	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.5	N.D.	+0.3	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	N.D.	-0.3	-0.2	-0.3
carbon source	Carbon source D-Mannitol 10 mM	+0.4	N.D.	-0.4	+0.2	-0.2
carbon source	L-Histidine (C)	+0.7	N.D.	-0.4	-0.2	-0.1
soil	soil sample 7; outgrowth in LB	+0.3	N.D.	+0.3	-0.5	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	N.D.	-0.4	+0.1	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	N.D.	+0.5	+0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	N.D.	-0.1	+0.2	+0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	N.D.	-0.3	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	+0.4	-0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	N.D.	-0.3	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	N.D.	-0.0	-0.1	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.5	N.D.	-0.4	+0.2	+0.2
seeds	Growth on radish seeds for 72 hours	-0.0	N.D.	+1.0	-0.2	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	N.D.	+0.2	+0.3	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	N.D.	-0.2	-0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	N.D.	-0.1	+0.5	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	N.D.	-0.2	+0.1	+1.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.4	N.D.	+0.5	+0.1	+0.3
phage	P. simiae OR1 MOI 0.1	+0.6	N.D.	+0.7	-0.0	+0.3