Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10535 and PS417_10540 are separated by 546 nucleotidesPS417_10540 and PS417_10545 are separated by 8 nucleotidesPS417_10545 and PS417_10550 are separated by 131 nucleotidesPS417_10550 and PS417_10555 are separated by 227 nucleotides PS417_10535: PS417_10535 - hypothetical protein, at 2,247,527 to 2,247,856 _10535 PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697 _10545 PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778 _10550 PS417_10555: PS417_10555 - major facilitator transporter, at 2,252,006 to 2,253,631 _10555
Group Condition PS417_10535 PS417_10540 PS417_10545 PS417_10550 PS417_10555
carbon source L-Valine (C) -3.9 -1.0 N.D. -0.3 -0.4
carbon source L-Valine (C) -3.3 -0.7 N.D. -0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.9 N.D. -0.6 -0.0
carbon source L-Isoleucine (C) -1.5 -0.0 N.D. -0.3 +0.0
carbon source acetate (C) -1.1 +0.0 N.D. -0.3 -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.7 -0.2 N.D. -0.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.9 N.D. -0.3 -0.1
liquid stress Scopoletin 3 mM; liquid stress -0.6 -0.3 N.D. -0.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.6 N.D. -0.6 +0.0
phage P. simiae Grant Run MOI 10 -0.4 -0.7 N.D. +0.2 -0.2
phage P. simiae ORA MOI 0.1 -1.4 +0.5 N.D. -0.0 -0.2
carbon source D-Galacturonic Acid (C) -1.1 -0.1 N.D. +0.3 -0.2
phage P. simiae ORA MOI 0.1 -0.5 -0.5 N.D. -0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.5 N.D. +0.1 +0.1
carbon source Putrescine (C) -1.1 +0.4 N.D. -0.2 -0.0
seeds Growth on radish seeds for 72 hours -0.5 -0.6 N.D. -0.1 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 -0.6 N.D. -0.8 +0.2
carbon source Gly-Glu (C) -1.1 +0.2 N.D. +0.1 -0.0
carbon source 2'-Deoxyinosine 5 mM (C) -1.0 -0.2 N.D. +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.5 N.D. -0.3 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 +0.6 N.D. +0.4 -0.4
stress methylglyoxal 0.032 vol% -1.0 +0.5 N.D. -0.2 +0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.6 +0.5 N.D. +0.2 -0.4
carbon source L-Histidine (C) -0.4 +0.7 N.D. -0.4 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -0.8 +0.4 N.D. +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 +0.4 N.D. +0.2 +0.4
soil soil sample 7; outgrowth in LB +0.2 +0.3 N.D. +0.3 -0.5
seeds Growth on radish seeds for 72 hours -0.2 -0.0 N.D. +1.0 -0.2
phage P. simiae OR1 MOI 0.1 -0.2 +0.6 N.D. +0.7 -0.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.5 N.D. -0.1 +0.5
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