Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10530 and PS417_10535 are separated by 59 nucleotidesPS417_10535 and PS417_10540 are separated by 546 nucleotidesPS417_10540 and PS417_10545 are separated by 8 nucleotidesPS417_10545 and PS417_10550 are separated by 131 nucleotides PS417_10530: PS417_10530 - LysR family transcriptional regulator, at 2,246,562 to 2,247,467 _10530 PS417_10535: PS417_10535 - hypothetical protein, at 2,247,527 to 2,247,856 _10535 PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697 _10545 PS417_10550: PS417_10550 - DNA topoisomerase III, at 2,249,829 to 2,251,778 _10550
Group Condition PS417_10530 PS417_10535 PS417_10540 PS417_10545 PS417_10550
carbon source L-Valine (C) +0.1 -3.9 -1.0 N.D. -0.3
carbon source L-Valine (C) -0.3 -3.3 -0.7 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.4 -0.9 N.D. -0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.8 -0.2 -0.5 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.2 -0.6 N.D. -0.6
carbon source L-Isoleucine (C) -0.1 -1.5 -0.0 N.D. -0.3
liquid stress Scopoletin 3 mM; liquid stress -0.1 -0.6 -0.3 N.D. -0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.5 -0.2 -0.0 N.D. +0.2
carbon source L-Leucine (C) -0.4 -0.8 +0.1 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 +0.2 -0.6 N.D. -0.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.2 -0.1 -0.1 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.8 -0.5 N.D. +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -1.0 -0.2 N.D. +0.3
seeds Growth on radish seeds for 72 hours +0.3 -0.5 -0.6 N.D. -0.1
carbon source Gly-Glu (C) -0.1 -1.1 +0.2 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.2 -0.9 N.D. -0.3
phage P. simiae ORA MOI 0.1 +0.1 -1.4 +0.5 N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.8 +0.5 N.D. -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.5 -0.7 +0.1 N.D. +0.3
carbon source Putrescine (C) +0.2 -1.1 +0.4 N.D. -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -0.2 -0.4 N.D. +0.5
phage P. simiae Grant Run MOI 0.1 -0.4 -0.6 +0.5 N.D. +0.0
stress methylglyoxal 0.032 vol% +0.3 -1.0 +0.5 N.D. -0.2
solid stress 80% Methanol 2 mM; solid stress -0.6 +0.5 +0.2 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -1.3 +0.6 N.D. +0.4
carbon source Carbon source D-Mannitol 2.5 mM +0.3 -0.8 +0.4 N.D. +0.1
phage P. simiae Grant Run MOI 10 +0.6 -0.6 -0.2 N.D. +0.3
rhizosphere rhizosphere sample 8; outgrowth in LB +0.3 -0.8 +0.4 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.2 +0.5 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +0.6 +0.5 N.D. -0.1
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