Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10525 and PS417_10530 are separated by 133 nucleotidesPS417_10530 and PS417_10535 are separated by 59 nucleotidesPS417_10535 and PS417_10540 are separated by 546 nucleotidesPS417_10540 and PS417_10545 are separated by 8 nucleotides PS417_10525: PS417_10525 - succinyl-CoA:3-ketoacid-CoA transferase, at 2,245,730 to 2,246,428 _10525 PS417_10530: PS417_10530 - LysR family transcriptional regulator, at 2,246,562 to 2,247,467 _10530 PS417_10535: PS417_10535 - hypothetical protein, at 2,247,527 to 2,247,856 _10535 PS417_10540: PS417_10540 - NAD-dependent deacetylase, at 2,248,403 to 2,249,248 _10540 PS417_10545: PS417_10545 - histidine kinase, at 2,249,257 to 2,249,697 _10545
Group Condition PS417_10525 PS417_10530 PS417_10535 PS417_10540 PS417_10545
carbon source L-Valine (C) N.D. +0.1 -3.9 -1.0 N.D.
carbon source L-Valine (C) N.D. -0.3 -3.3 -0.7 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -1.8 -0.2 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.6 -0.4 -0.9 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -1.5 -0.2 -0.0 N.D.
carbon source L-Isoleucine (C) N.D. -0.1 -1.5 -0.0 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.2 -1.0 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.8 -0.5 N.D.
supernatant control Vogels_fungal_media 0.1X N.D. -0.6 -0.3 -0.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -1.2 -0.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 -0.2 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 -0.1 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.5 -0.5 -0.3 N.D.
carbon source L-Leucine (C) N.D. -0.2 -0.8 -0.3 N.D.
carbon source L-Leucine (C) N.D. -0.4 -0.8 +0.1 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.5 -0.7 +0.1 N.D.
carbon source Gly-Glu (C) N.D. -0.1 -1.1 +0.2 N.D.
seeds Growth on radish seeds for 72 hours N.D. +0.3 -0.5 -0.6 N.D.
phage P. simiae ORA MOI 0.1 N.D. +0.1 -1.4 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.0 -1.3 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 -0.2 -0.9 N.D.
phage P. simiae Grant Run MOI 0.1 N.D. -0.4 -0.6 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.8 +0.5 N.D.
carbon source Putrescine (C) N.D. +0.2 -1.1 +0.4 N.D.
stress methylglyoxal 0.032 vol% N.D. +0.3 -1.0 +0.5 N.D.
phage P. simiae Grant Run MOI 10 N.D. +0.6 -0.6 -0.2 N.D.
carbon source Carbon source D-Mannitol 2.5 mM N.D. +0.3 -0.8 +0.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.3 -0.8 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.8 -0.2 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.6 +0.6 +0.5 N.D.
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PS417_10525
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PS417_10530
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PS417_10540
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