Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10520	PS417_10525	PS417_10530	PS417_10535	PS417_10540
carbon source	L-Valine (C)	-1.0	N.D.	+0.1	-3.9	-1.0
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-2.7	N.D.	-1.8	-0.2	-0.5
carbon source	L-Valine (C)	+0.0	N.D.	-0.3	-3.3	-0.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-2.5	N.D.	-1.5	-0.2	-0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-2.3	N.D.	-1.2	-0.1	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	N.D.	-0.2	-1.0	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.7	N.D.	-0.5	+0.1	-0.3
carbon source	L-Leucine (C)	-1.0	N.D.	-0.2	-0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-0.6	-0.4	-0.9
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-1.3	N.D.	-0.7	-0.1	-0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-1.0	N.D.	-0.5	-0.2	-0.4
carbon source	L-Leucine (C)	-1.0	N.D.	-0.4	-0.8	+0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.2	N.D.	-0.5	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	-0.5	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	N.D.	-0.0	-1.3	+0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-1.6	N.D.	+0.3	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	N.D.	+0.2	-0.6	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.6	N.D.	-0.4	+0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	N.D.	+0.4	-0.2	-0.9
phage	P. simiae Grant Run MOI 0.1	-0.4	N.D.	-0.4	-0.6	+0.5
phage	P. simiae ORA MOI 0.1	-0.1	N.D.	+0.1	-1.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	N.D.	+0.1	-0.7	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	N.D.	-0.2	-0.6	+0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	N.D.	+0.3	-0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	N.D.	-0.0	+0.6	-0.2
soil	soil sample 6; outgrowth in LB	-1.3	N.D.	+0.2	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	+0.1	-0.2	+0.7
stress	methylglyoxal 0.032 vol%	+0.1	N.D.	+0.3	-1.0	+0.5
carbon source	Putrescine (C)	+0.4	N.D.	+0.2	-1.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	N.D.	+0.6	+0.6	+0.5