Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10500	PS417_10505	PS417_10510	PS417_10515	PS417_10520
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.0	-0.1	N.D.	-3.8	-2.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.1	-0.3	N.D.	-3.2	-2.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.1	+0.4	N.D.	-3.2	-2.3
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.2	+0.1	N.D.	-1.8	-1.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	-0.3	N.D.	-0.6	-1.6
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.1	+0.1	N.D.	-1.6	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.6	N.D.	-0.5	-1.1
carbon source	L-Leucine (C)	-0.1	-0.1	N.D.	-1.0	-1.0
carbon source	2-Deoxy-D-Ribose (C)	-0.0	+0.2	N.D.	-1.9	-0.5
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.4	N.D.	-1.8	-0.8
soil	soil sample 6; outgrowth in LB	+0.0	-0.5	N.D.	-0.3	-1.3
carbon source	L-Leucine (C)	+0.1	-0.3	N.D.	-0.8	-1.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	-0.5	N.D.	+0.0	-1.6
carbon source	2-Deoxy-D-Ribose (C)	-0.1	-0.3	N.D.	-1.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	N.D.	-0.3	-0.9
motility	inner cut, LB soft agar motility assay	-0.1	-0.2	N.D.	-0.4	-1.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	+0.1	N.D.	+0.1	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.3	N.D.	-0.2	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.6	N.D.	-0.2	-0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.3	N.D.	-0.7	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	N.D.	-0.5	-0.9
carbon source	octanoate (C)	+0.2	-0.2	N.D.	-1.2	+0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.0	+0.3	N.D.	+0.1	-1.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	-0.2	N.D.	+0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.5	N.D.	-0.5	-0.7
phage	P. simiae ORA MOI 0.1	-0.1	-0.5	N.D.	+0.5	-0.4
phage	P. simiae OR Antrim MOI 0.1	-0.3	+0.4	N.D.	-0.6	+0.4
nophagecontrol	Only library	-0.3	+0.2	N.D.	+0.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.9	N.D.	+0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.6	N.D.	-0.1	+1.1