Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10495 and PS417_10500 are separated by 147 nucleotidesPS417_10500 and PS417_10505 are separated by 0 nucleotidesPS417_10505 and PS417_10510 are separated by 149 nucleotidesPS417_10510 and PS417_10515 are separated by 187 nucleotides PS417_10495: PS417_10495 - lysine transporter LysE, at 2,240,393 to 2,241,007 _10495 PS417_10500: PS417_10500 - lipoprotein, at 2,241,155 to 2,242,240 _10500 PS417_10505: PS417_10505 - hypothetical protein, at 2,242,241 to 2,243,089 _10505 PS417_10510: PS417_10510 - esterase, at 2,243,239 to 2,243,655 _10510 PS417_10515: PS417_10515 - acetyl-CoA acetyltransferase, at 2,243,843 to 2,245,024 _10515
Group Condition PS417_10495 PS417_10500 PS417_10505 PS417_10510 PS417_10515
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.0 -0.0 -0.1 N.D. -3.8
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 -0.1 -0.3 N.D. -3.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.0 -0.1 +0.4 N.D. -3.2
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.0 +0.2 N.D. -1.9
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.2 +0.1 N.D. -1.8
carbon source 2-Deoxy-D-Ribose (C) +0.0 -0.1 -0.3 N.D. -1.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.0 +0.1 +0.1 N.D. -1.6
carbon source 2-Deoxy-D-Ribose (C) +0.0 +0.1 +0.4 N.D. -1.8
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.1 -0.2 -0.6 N.D. -0.4
carbon source L-Leucine (C) -0.1 +0.1 -0.3 N.D. -0.8
carbon source L-Leucine (C) +0.1 -0.1 -0.1 N.D. -1.0
carbon source octanoate (C) +0.3 -0.1 -0.2 N.D. -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 +0.2 -0.6 N.D. -0.6
phage P. simiae Grant Run MOI 10 -0.6 -0.3 -0.4 N.D. +0.3
carbon source octanoate (C) +0.2 +0.2 -0.2 N.D. -1.2
phage P. simiae OR Antrim MOI 0.1 -0.4 -0.3 +0.4 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.4 -0.3 N.D. +0.3
carbon source L-Valine (C) +0.2 +0.2 -0.1 N.D. -0.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.4 -0.6 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.0 -0.6 N.D. +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.4 -0.3 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -0.2 +0.5 N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.3 -0.6 N.D. -0.2
seeds Growth on radish seeds for 72 hours +0.1 +0.4 -0.7 N.D. +0.1
phage JP1 MOI 0.1 -0.4 -0.1 +0.6 N.D. -0.3
phage P. simiae ORA MOI 0.1 +0.1 -0.1 -0.5 N.D. +0.5
agar plate interaction control Taped volatile agar plate with no fungus +0.3 -0.5 -0.2 N.D. +0.6
root root sample 6; outgrowth in LB +0.3 +0.1 +0.5 N.D. -0.5
phage P. simiae OR Antrim MOI 0.1 -0.3 +0.0 +0.4 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +0.1 +0.9 N.D. +0.5
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