Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10475	PS417_10480	PS417_10485	PS417_10490	PS417_10495
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-2.2	-0.3	+0.0	-0.1
carbon source	L-Valine (C)	-0.1	-1.0	-0.4	-0.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-1.7	-0.0	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-1.9	+0.1	+0.0	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.6	-0.1	+0.1	-0.0
stress	Dimethyl Sulfoxide 5 vol%	+0.1	-1.2	-0.1	-0.7	+0.2
no phage control	Time6-nophage	+0.2	-1.0	+0.0	-0.6	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.4	-0.5	+0.1	+0.4
phage moi 100	Time6-phageFRS	+0.1	-1.2	-0.0	-0.5	+0.1
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.8	-0.3	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.6	+0.1	-0.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.1	+0.3	-0.0	+0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-1.0	+0.3	+0.1	-0.3
stress	Doxycycline hyclate 0.001 mg/ml	+0.1	-0.7	-0.6	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.9	-0.2	+0.7	+0.4
soil	soil sample 7; outgrowth in LB	+0.6	-1.1	+0.4	+0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.5	+0.2	-0.6	+0.4
carbon source	L-Valine (C)	-0.1	+1.4	-0.1	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.6	-0.2	+0.8	-0.0
phage	JP1 MOI 10	+0.1	+0.3	-0.6	+1.1	-0.5
phage	JP1 MOI 0.1	+0.3	-0.3	+0.3	+0.8	-0.4
phage	P. simiae OR1 MOI 0.1	+0.1	+0.2	-0.5	+1.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.8	-0.1	+2.0	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6	+1.6	+0.4	-1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.5	-0.4	+0.4	-0.0
seeds	Growth on radish seeds for 72 hours	-0.3	+0.1	+0.3	+1.3	-0.1
soil	soil sample 5; outgrowth in LB	+0.3	-0.3	+0.2	+0.9	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.7	-0.1	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+2.6	-0.2	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+3.6	-0.0	+0.3	+0.1