Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10470	PS417_10475	PS417_10480	PS417_10485	PS417_10490
carbon source	L-Valine (C)	-0.3	-0.1	-1.0	-0.4	-0.7
stress	Dimethyl Sulfoxide 5 vol%	-0.2	+0.1	-1.2	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.0	-1.9	+0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.2	-1.7	-0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	-1.4	-0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	-2.2	-0.3	+0.0
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.5	-0.8	-0.3	+0.3
no phage control	Time6-nophage	+0.2	+0.2	-1.0	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.0	-1.6	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.1	-1.1	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.4	-1.0	-0.0	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.0	+0.1	-0.7	-0.6	+0.8
soil	soil sample 7; outgrowth in LB	+0.1	+0.6	-1.1	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.4	-0.6	-0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.3	-0.2	+0.5	+0.8
carbon source	L-Valine (C)	-0.1	-0.1	+1.4	-0.1	-0.6
soil	soil sample 5; outgrowth in LB	-0.6	+0.3	-0.3	+0.2	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.1	-0.8	-0.1	+2.0
carbon source	2'-Deoxyinosine 5 mM (C)	+0.6	-0.1	+0.8	-0.5	+0.3
phage	JP1 MOI 10	+0.3	+0.1	+0.3	-0.6	+1.1
seeds	Growth on radish seeds for 72 hours	-0.1	-0.3	+0.1	+0.3	+1.3
phage	P. simiae OR1 MOI 0.1	+0.3	+0.1	+0.2	-0.5	+1.2
soil	soil sample 6; outgrowth in LB	-0.3	+0.4	+0.2	+0.7	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	-0.2	+1.1	+0.2	-0.2
phage	P. simiae Grant Run MOI 0.1	+0.4	+0.1	+1.4	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	+1.5	-0.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.6	+1.6	+0.4	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.1	+2.6	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.2	+1.7	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.4	+3.6	-0.0	+0.3