Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10465	PS417_10470	PS417_10475	PS417_10480	PS417_10485
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-0.0	-1.9	+0.1
supernatant control	Vogels_fungal_media 0.1X	-0.4	-0.4	-0.5	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.6	+0.1	-2.2	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.2	-1.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.0	-1.0	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.4	-0.3	-1.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.2	+0.2	-1.7	-0.0
phage	JP1 MOI 1	-0.3	-0.2	-0.0	-1.2	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	-0.6	-0.1	+0.2	-0.5
carbon source	L-Valine (C)	+0.5	-0.3	-0.1	-1.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.6	+0.0	-1.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	-0.3	-1.1	+0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.1	-0.2	+0.2	-1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.6	-0.1	-1.1	-0.0
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.4	-0.3	+0.3	-0.9	-0.3
seeds	Growth on radish seeds for 72 hours	-0.6	-0.1	-0.3	+0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	-0.3	-0.1	-0.8	-0.1
phage	P. simiae OR1 MOI 0.1	-0.7	+0.3	+0.1	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.2	+0.4	-0.6	-0.2
soil	soil sample 7; outgrowth in LB	-0.2	+0.1	+0.6	-1.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	-0.4	+0.8	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	+0.6	-0.1	+0.8	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.3	-0.2	+1.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.6	-0.2	+1.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.2	+0.2	+0.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.8	-0.2	+1.7	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.3	+0.4	+0.1	+1.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.2	+0.1	+2.6	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	+0.2	+0.6	+1.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.1	-0.4	+3.6	-0.0