Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10440	PS417_10445	PS417_10450	PS417_10455	PS417_10460
stress	Doxycycline hyclate 0.001 mg/ml	+0.0	-1.9	N.D.	-1.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-1.6	N.D.	-0.5	-0.0
phage	JP1 MOI 10	-0.3	-1.5	N.D.	-0.2	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.4	-0.6	N.D.	-1.0	-0.1
seeds	Growth on radish seeds for 72 hours	-0.8	-1.0	N.D.	-0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.5	N.D.	-0.9	+0.1
soil	soil sample 4; outgrowth in LB	-0.2	-1.0	N.D.	+0.4	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.4	N.D.	-0.7	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.2	-0.4	N.D.	+0.3	-0.7
seeds	Growth on radish seeds for 72 hours	-0.3	-0.9	N.D.	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.8	N.D.	-0.3	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.4	N.D.	-0.5	+0.2
carbon source	L-Valine (C)	+0.9	-0.9	N.D.	-0.5	-0.0
root	root sample 6; outgrowth in LB	-0.3	+0.0	N.D.	+0.7	-0.9
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.4	+0.7	N.D.	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.6	N.D.	-0.9	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	+0.0	N.D.	+1.0	-0.8
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.3	+0.6	N.D.	+0.4	-0.6
soil	soil sample 7; outgrowth in LB	-0.6	+0.4	N.D.	+0.7	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.8	N.D.	-0.6	-0.2
phage moi 100	Time6-phageFRS	-0.1	-0.6	N.D.	+1.0	+0.0
soil	soil sample 5; outgrowth in LB	-0.3	+0.4	N.D.	+0.7	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	+0.9	N.D.	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.5	N.D.	+0.8	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+1.5	N.D.	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.7	N.D.	+0.8	+0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.4	+0.8	N.D.	+0.4	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	+0.5	N.D.	+0.9	+0.0
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.4	+0.5	N.D.	+0.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+2.7	N.D.	-0.0	-0.2