Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10425	PS417_10430	PS417_10435	PS417_10440	PS417_10445
stress	Doxycycline hyclate 0.001 mg/ml	-1.4	N.D.	+0.3	+0.0	-1.9
stress	methylglyoxal 0.032 vol%	-1.9	N.D.	+0.0	-0.0	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.5	N.D.	-0.7	+0.0	-0.4
phage	P. simiae ORA MOI 10	-0.5	N.D.	-0.7	-0.0	-0.9
motility	inner cut, LB soft agar motility assay	-1.1	N.D.	+0.1	-0.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	-0.4	-0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.4	N.D.	-0.5	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	-1.0	+0.3	-0.8
phage	Wcs_0.1	-1.4	N.D.	+0.3	+0.1	-0.5
phage	JP1 MOI 10	+0.6	N.D.	+0.1	-0.3	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	N.D.	+0.2	-0.5	-1.6
solid stress	Fraxetin 3 mM; solid stress	+0.7	N.D.	-0.6	-0.4	-0.6
soil	soil sample 7; outgrowth in LB	-1.1	N.D.	+0.4	-0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	N.D.	+0.1	+0.6	-0.5
seeds	Growth on radish seeds for 24 hours	+1.1	N.D.	-0.4	-0.1	-1.1
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-1.0	N.D.	-0.3	+0.5	+0.2
carbon source	Carbon source D-Mannitol 10 mM	-1.0	N.D.	+0.5	-0.3	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	+0.6	N.D.	-0.9	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	N.D.	+0.3	-0.5	-0.8
phage	P. simiae OR Antrim MOI 10	-1.0	N.D.	+0.6	-0.1	+0.7
seeds	Growth on radish seeds for 72 hours	+1.4	N.D.	+0.7	-0.8	-1.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.7	N.D.	-0.5	-0.2	+0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-0.8	N.D.	+0.3	+0.5	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	+0.3	-0.7	+0.5
phage	P. simiae Grant Run MOI 0.1	+1.1	N.D.	-0.3	+0.4	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.5	N.D.	+0.1	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	N.D.	+0.3	-0.4	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	N.D.	+0.7	+0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	-0.3	-0.1	+2.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.7	N.D.	+0.1	-0.3	+1.5