Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10415	PS417_10420	PS417_10425	PS417_10430	PS417_10435
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.0	-1.4	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.0	-0.8	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-1.2	-0.4	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-0.2	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.3	-1.5	N.D.	-0.7
phage	P. simiae ORA MOI 0.1	-0.4	-0.3	-0.9	N.D.	-0.3
phage	P. simiae OR Antrim MOI 1	-0.1	-0.3	-1.0	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.9	-0.2	N.D.	-0.9
nophagecontrol	TIme6-nophage	-0.2	-0.2	-1.0	N.D.	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.2	-1.2	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.5	-0.5	N.D.	-0.3
root	root sample 6; outgrowth in LB	+0.2	-0.1	-1.5	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.2	-1.2	N.D.	-0.2
stress	methylglyoxal 0.032 vol%	+0.1	+0.5	-1.9	N.D.	+0.0
soil	soil sample 7; outgrowth in LB	-0.4	-0.1	-1.1	N.D.	+0.4
stress	Doxycycline hyclate 0.001 mg/ml	-0.0	+0.1	-1.4	N.D.	+0.3
phage	Wcs_0.1	-0.1	+0.2	-1.4	N.D.	+0.3
carbon source	Gly-Glu (C)	+0.3	+0.2	-1.4	N.D.	-0.0
carbon source	Carbon source D-Mannitol 10 mM	+0.1	-0.3	-1.0	N.D.	+0.5
phage	P. simiae OR Antrim MOI 10	-0.2	+0.1	-1.0	N.D.	+0.6
phage	P. simiae Grant Run MOI 0.1	-0.2	-0.5	+0.8	N.D.	-0.4
seeds	Growth on radish seeds for 72 hours	-0.1	-0.5	+0.9	N.D.	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.2	+0.6	N.D.	-0.9
carbon source	Carbon source L-Ornithine 10 mM	+0.2	-0.3	-0.7	N.D.	+0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.1	+0.4	+0.7	N.D.	-0.5
seeds	Growth on radish seeds for 24 hours	+0.0	+0.1	+1.1	N.D.	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-0.2	+0.9	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.2	+1.7	N.D.	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	+1.5	N.D.	+0.1
seeds	Growth on radish seeds for 72 hours	+0.1	-0.5	+1.4	N.D.	+0.7