Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_10400 and PS417_10405 overlap by 4 nucleotidesPS417_10405 and PS417_10410 are separated by 91 nucleotidesPS417_10410 and PS417_10415 are separated by 225 nucleotidesPS417_10415 and PS417_10420 are separated by 156 nucleotides PS417_10400: PS417_10400 - membrane protein, at 2,224,145 to 2,225,212 _10400 PS417_10405: PS417_10405 - filamentous hemagglutinin, at 2,225,209 to 2,225,379 _10405 PS417_10410: PS417_10410 - hypothetical protein, at 2,225,471 to 2,225,665 _10410 PS417_10415: PS417_10415 - hypothetical protein, at 2,225,891 to 2,226,265 _10415 PS417_10420: PS417_10420 - shikimate dehydrogenase, at 2,226,422 to 2,227,240 _10420
Group Condition PS417_10400 PS417_10405 PS417_10410 PS417_10415 PS417_10420
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.3 N.D. -0.1 -0.7
phage JP1 MOI 10 +0.4 -3.4 N.D. -0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -2.6 N.D. -0.0 -0.1
phage P. simiae ORA MOI 0.1 -0.2 -1.7 N.D. -0.4 -0.3
phage P. simiae OR Antrim MOI 0.1 +0.1 -1.9 N.D. -0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 -0.3 N.D. -0.3 -0.3
seeds Growth on radish seeds for 72 hours -1.3 -0.7 N.D. +0.1 -0.5
stress Choline chloride 300 mM -0.6 -1.5 N.D. -0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.7 N.D. -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -2.0 N.D. +0.1 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -2.0 N.D. +0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -2.0 N.D. -0.1 +0.1
soil soil sample 4; outgrowth in LB -0.8 -1.1 N.D. +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -1.8 N.D. +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 -2.6 N.D. +0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -1.7 N.D. -0.1 +0.2
motility inner cut, LB soft agar motility assay +0.2 -1.6 N.D. -0.0 -0.3
liquid stress Scopoletin 1 mM; liquid stress -0.2 -1.7 N.D. -0.1 +0.2
carbon source D-Glucosamine Hydrochloride (C) +0.3 -1.6 N.D. -0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 +0.6 N.D. +0.3 -0.6
soil soil sample 7; outgrowth in LB +0.5 -1.3 N.D. -0.4 -0.1
carbon source D-Glucosamine Hydrochloride (C) +0.2 -1.6 N.D. -0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -1.3 N.D. -0.1 -0.2
soil soil sample 8; outgrowth in LB -1.1 +0.7 N.D. -0.1 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 -1.6 N.D. +0.2 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 -1.0 N.D. -0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.7 N.D. -0.7 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 -0.8 N.D. +0.7 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.0 -0.0 N.D. -0.3 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.4 +1.4 N.D. +0.0 +0.3
remove
PS417_10400
plot		 remove
PS417_10405
plot		 remove
PS417_10410		 remove
PS417_10415
plot		 remove
PS417_10420
plot