Fitness for 5 genes in Pseudomonas sp. DMC3

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Top 18 experiments (either direction), sorted by average fitness

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500 ntGFF2039 and GFF2040 are separated by 83 nucleotidesGFF2040 and GFF2041 are separated by 75 nucleotidesGFF2041 and GFF2042 overlap by 1 nucleotidesGFF2042 and GFF2043 are separated by 242 nucleotides GFF2039 - Major cold shock protein CspA, at 282,647 to 282,856 GFF2039 GFF2040 - hypothetical protein, at 282,940 to 283,317 GFF2040 GFF2041 - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 283,393 to 284,202 GFF2041 GFF2042 - Succinyl-diaminopimelate desuccinylase, at 284,202 to 285,353 GFF2042 GFF2043 - hypothetical protein, at 285,596 to 288,187 GFF2043
Group Condition GFF2039 GFF2040 GFF2041 GFF2042 GFF2043
carbon source D,L-Lactate (C) -0.4 -1.9 +0.0 N.D. +0.1
carbon source D-Glucose (C) -0.3 -1.1 -0.5 N.D. -0.0
carbon source D,L-Lactate and casaminos (C) -0.3 -0.4 -0.6 N.D. +0.2
carbon source D,L-Lactate (C) -0.5 -0.3 -0.2 N.D. +0.1
mixed community Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane -0.6 +0.2 -0.3 N.D. -0.1
carbon source D,L-Lactate and casaminos (C) -0.5 -0.2 -0.3 N.D. +0.2
mixed community Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane -0.2 -0.6 +0.1 N.D. -0.1
carbon source D-Glucose and D,L-Lactate (C) -0.3 -0.2 -0.2 N.D. +0.0
carbon source D-Glucose and casaminos (C) -0.0 -0.4 -0.4 N.D. +0.3
mixed community Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane -0.8 +0.2 +0.1 N.D. -0.0
carbon source D,L-Lactate (C) +0.1 -0.6 -0.1 N.D. +0.0
carbon source D-Glucose and D,L-Lactate (C) +0.1 -0.4 -0.1 N.D. -0.0
carbon source D-Glucose and casaminos (C) +0.3 -0.5 -0.1 N.D. +0.2
carbon source D-Glucose (C) +0.4 -0.4 -0.0 N.D. +0.0
carbon source D-Glucose and D,L-Lactate (C) +0.2 +0.0 -0.1 N.D. +0.1
carbon source D,L-Lactate and casaminos (C) +0.2 -0.1 +0.0 N.D. +0.2
carbon source D-Glucose (C) +0.1 +0.6 +0.1 N.D. -0.1
carbon source D-Glucose and casaminos (C) +0.5 +0.5 -0.1 N.D. +0.1
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