Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10385 and PS417_10390 are separated by 35 nucleotidesPS417_10390 and PS417_10395 are separated by 79 nucleotidesPS417_10395 and PS417_10400 are separated by 226 nucleotidesPS417_10400 and PS417_10405 overlap by 4 nucleotides PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652 _10385 PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059 _10390 PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918 _10395 PS417_10400: PS417_10400 - membrane protein, at 2,224,145 to 2,225,212 _10400 PS417_10405: PS417_10405 - filamentous hemagglutinin, at 2,225,209 to 2,225,379 _10405
Group Condition PS417_10385 PS417_10390 PS417_10395 PS417_10400 PS417_10405
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -1.6 -0.1 -0.3 -2.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.4 +0.1 -0.3 -2.3
phage JP1 MOI 10 +0.0 -0.3 +0.1 +0.4 -3.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.4 -0.2 -0.1 -1.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.6 -0.4 +0.0 -0.0 -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.1 -0.1 -0.2 -1.7
seeds Growth on radish seeds for 24 hours +0.4 -1.2 -0.0 -1.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.3 +0.2 -0.1 -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.9 -0.0 -0.5 +0.3 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.8 -0.3 -0.8 +0.2
seeds Growth on radish seeds for 72 hours -0.3 +0.6 -0.5 -1.3 -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.2 -0.2 -0.3 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.8 +0.1 -1.7 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.6 +0.4 -0.2 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.4 -0.3 +0.0 -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.6 +0.6 -0.0 -0.4 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.3 -0.4 -0.1 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.8 +0.1 +0.6 -2.6
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.5 -0.6 +0.8 -0.8
carbon source D-Glucosamine Hydrochloride (C) -0.5 +0.5 +0.1 +0.3 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.9 -1.0 +0.7 +0.7
soil soil sample 7; outgrowth in LB +1.0 -1.1 +0.3 +0.5 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.2 -0.1 -0.1 +0.3 -1.6
stress methylglyoxal 0.032 vol% +0.3 +0.4 +0.5 -0.4 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -1.9 +0.1 +0.7 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.9 -0.2 -0.9 +0.5 -1.3
carbon source 2-Deoxy-D-Ribose (C) +0.3 -1.2 -0.1 +0.4 +0.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 -1.5 -0.0 +0.4 +1.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.9 +0.1 +2.0 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 +0.3 +1.1 +0.7 +0.3
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