Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10375 and PS417_10380 are separated by 5 nucleotidesPS417_10380 and PS417_10385 are separated by 96 nucleotidesPS417_10385 and PS417_10390 are separated by 35 nucleotidesPS417_10390 and PS417_10395 are separated by 79 nucleotides PS417_10375: PS417_10375 - chemotaxis protein CheY, at 2,219,960 to 2,220,700 _10375 PS417_10380: PS417_10380 - catalase, at 2,220,706 to 2,222,139 _10380 PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652 _10385 PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059 _10390 PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918 _10395
Group Condition PS417_10375 PS417_10380 PS417_10385 PS417_10390 PS417_10395
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 -0.5 -0.9 -1.0
phage P. simiae ORA MOI 10 N.D. -0.0 -0.3 -1.1 -0.3
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.4 -0.2 -0.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.0 -1.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.7 -0.8 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.1 -1.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.1 -0.9 -0.0 -0.5
root root sample 6; outgrowth in LB N.D. -0.0 -0.4 -1.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -0.2 -1.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.2 -0.3 -1.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.3 +0.1 -1.9 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.0 -0.8 -0.9 +0.4
seeds Growth on radish seeds for 24 hours N.D. -0.4 +0.4 -1.2 -0.0
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. -0.1 +0.2 -1.0 -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.2 -0.1 -0.9 -0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +0.3 +0.2 -1.5 -0.0
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.1 +0.3 -1.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -0.7 -0.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.6 +0.1 -1.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 -0.1 -0.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 -0.1 -0.9 +0.6
soil soil sample 7; outgrowth in LB N.D. -0.1 +1.0 -1.1 +0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 +0.8 -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 -0.3 +0.8 -0.2
carbon source Carbon source L-Citrulline 10 mM N.D. -0.2 +0.2 +0.8 -0.4
soil soil sample 3; outgrowth in LB N.D. -0.5 +0.0 +1.1 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.1 -0.4 +0.3 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 +1.9 -0.2 -0.9
carbon source Gly-Glu (C) N.D. +0.3 -0.0 +0.9 -0.2
carbon source L-Valine (C) N.D. +0.5 -0.2 +1.0 -0.3
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