Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10370	PS417_10375	PS417_10380	PS417_10385	PS417_10390
root	root sample 6; outgrowth in LB	-0.4	N.D.	-0.0	-0.4	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	N.D.	-0.1	-0.9	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	N.D.	+0.3	+0.1	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.4	-0.2	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	+0.2	-0.7	-0.8
seeds	Growth on radish seeds for 24 hours	-0.3	N.D.	-0.4	+0.4	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	N.D.	-0.0	-0.8	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	+0.1	-0.0	-1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	N.D.	+0.0	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	N.D.	-0.6	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	+0.6	+0.1	-1.4
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.4	N.D.	-0.1	-0.1	-1.2
phage	P. simiae ORA MOI 10	+0.5	N.D.	-0.0	-0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	N.D.	-0.4	-0.1	-1.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	+0.2	N.D.	+0.3	+0.2	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.6	-0.6	-0.2
carbon source	2-Deoxy-D-Ribose (C)	+0.2	N.D.	-0.1	+0.3	-1.2
soil	soil sample 7; outgrowth in LB	-0.2	N.D.	-0.1	+1.0	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	+0.6	-0.5	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	-0.4	-0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	+0.3	-0.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	N.D.	+0.0	+0.1	+0.8
soil	soil sample 3; outgrowth in LB	-0.5	N.D.	-0.5	+0.0	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	N.D.	+0.2	-0.3	-0.5
phage	JP1 MOI 1	+0.9	N.D.	-0.0	-0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	N.D.	+0.2	+0.6	+0.3
phage	P. simiae Grant Run MOI 10	+0.7	N.D.	-0.2	-0.4	+0.5
phage	P. simiae OR Antrim MOI 1	+1.0	N.D.	+0.0	-0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	N.D.	+0.1	+1.9	-0.2
carbon source	L-Valine (C)	+0.2	N.D.	+0.5	-0.2	+1.0