Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10365	PS417_10370	PS417_10375	PS417_10380	PS417_10385
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.7	N.D.	+0.0	-0.4
stress	LB_noSalt with Chloride 1100 mM	-0.4	-0.7	N.D.	-0.2	-0.4
carbon source	D-Glucose-6-Phosphate (C)	-0.4	-0.5	N.D.	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-1.3	N.D.	+0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5	-0.9	N.D.	-0.1	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.7	N.D.	-0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.9	N.D.	-0.6	+0.2
seeds	Growth on radish seeds for 72 hours	-0.6	+0.2	N.D.	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	N.D.	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.5	N.D.	+0.6	-0.6
phage	P. simiae Grant Run MOI 0.1	-0.6	+0.3	N.D.	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.8	N.D.	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.6	N.D.	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.4	N.D.	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	N.D.	+0.3	-0.8
soil	soil sample 7; outgrowth in LB	-0.8	-0.2	N.D.	-0.1	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	N.D.	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.4	N.D.	+0.6	-0.5
phage	JP1 MOI 1	-0.2	+0.9	N.D.	-0.0	-0.7
phage	P. simiae OR Antrim MOI 1	-0.4	+1.0	N.D.	+0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.5	N.D.	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.7	N.D.	+0.2	+0.6
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.1	+0.7	N.D.	+0.1	-0.6
phage	P. simiae OR Antrim MOI 1	-0.6	+0.9	N.D.	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.5	N.D.	-0.0	+1.2
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.5	+0.3	N.D.	+0.3	+0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.3	N.D.	+0.2	+0.8
phage	P. simiae Grant Run MOI 10	+0.5	+0.4	N.D.	+0.4	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.5	N.D.	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-0.5	N.D.	+0.1	+1.9