Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10345	PS417_10350	PS417_10355	PS417_10360	PS417_10365
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	-0.6	-0.1	-0.6	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	-0.2	-0.0	-1.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.5	-0.2	-0.3	-0.6
carbon source	L-Valine (C)	+0.1	-0.5	-0.4	-0.6	-0.1
seeds	Growth on radish seeds for 72 hours	-0.3	+0.1	-0.3	-0.4	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.0	+0.0	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	+0.0	-0.1	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.4	-0.6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.3	-0.1	-0.8	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	-0.0	+0.1	-0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.2	-0.2	-0.4	-0.5
stress	Gentamicin 0.008 mg/ml	-1.1	-0.0	-0.0	+0.3	-0.1
phage	Wcs_1	-0.7	-0.1	+0.3	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	+0.2	-0.4	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-0.4	+0.3	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	+0.1	+0.3	-0.1	-0.6
soil	soil sample 7; outgrowth in LB	+0.6	-0.4	+0.0	+0.1	-0.8
seeds	Growth on radish seeds for 72 hours	-0.6	-0.3	+0.1	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	-0.3	-0.1	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-0.3	-0.2	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-0.3	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	-0.3	-0.3	+0.4
phage	P. simiae OR Antrim MOI 1	+0.7	-0.3	+0.1	+0.0	-0.6
phage	P. simiae Grant Run MOI 0.1	+0.7	+0.2	+0.1	-0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.4	+0.1	-0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.2	-0.2	-0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.2	-0.3	+0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.5	-0.3	-0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	-0.0	-0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.7	+0.3	+0.1	-0.4