Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2023 and GFF2024 are separated by 3 nucleotidesGFF2024 and GFF2025 are separated by 15 nucleotidesGFF2025 and GFF2026 overlap by 4 nucleotidesGFF2026 and GFF2027 overlap by 4 nucleotides GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150 GFF2023 GFF2024 - L-lysine permease, at 68,154 to 68,795 GFF2024 GFF2025 - Uncharacterized protein SCO3165, at 68,811 to 69,299 GFF2025 GFF2026 - Predicted Fe-S protein, at 69,296 to 69,553 GFF2026 GFF2027 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 69,550 to 70,197 GFF2027
Group Condition GFF2023 GFF2024 GFF2025 GFF2026 GFF2027
complex community Community=Locust bean gum; Passage=4 -0.6 -0.8 -0.9 N.D. -0.5
complex community Community=arabino-guar; Passage=4 -0.7 -0.0 -1.3 N.D. -0.5
complex community Community=arabino-guar; Passage=4 -0.8 +0.3 -1.6 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 -0.0 -0.2 N.D. -1.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.1 -1.3 N.D. -0.1
phage phage_bap4 -0.7 -0.3 -0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.0 -0.2 N.D. -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.2 -0.2 N.D. -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.1 -0.2 N.D. -0.9
complex community Community=Kojac gum; Passage=4 -0.3 -0.5 -0.1 N.D. -0.5
complex community Community=arabino-guar; Passage=4 -0.8 +0.6 -0.8 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.1 -0.1 N.D. -0.8
complex community Community=Locust bean gum; Passage=4 -0.2 +0.2 -1.0 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.0 -0.3 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.3 -0.0 N.D. -0.9
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.1 -0.4 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.1 -0.2 N.D. -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.1 +0.3 -0.2 N.D. -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.1 +0.1 N.D. -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 +0.1 -0.0 N.D. -1.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.5 +0.2 -0.4 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.2 -0.2 N.D. -0.7
complex community Community=Locust bean gum; Passage=4 -0.4 +0.3 -0.5 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.1 -0.4 N.D. -0.6
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 +0.1 -0.2 N.D. -0.8
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 +0.4 -0.0 N.D. -0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 +0.3 -0.2 N.D. -0.7
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.0 +0.4 N.D. -0.5
complex community Community=guar; Passage=4 -0.4 +0.5 +0.2 N.D. -0.4
complex community Community=guar; Passage=4 +0.0 -0.4 +0.7 N.D. -0.1
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