Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2021 and GFF2022 overlap by 4 nucleotidesGFF2022 and GFF2023 are separated by 137 nucleotidesGFF2023 and GFF2024 are separated by 3 nucleotidesGFF2024 and GFF2025 are separated by 15 nucleotides GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926 GFF2021 GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092 GFF2022 GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150 GFF2023 GFF2024 - L-lysine permease, at 68,154 to 68,795 GFF2024 GFF2025 - Uncharacterized protein SCO3165, at 68,811 to 69,299 GFF2025
Group Condition GFF2021 GFF2022 GFF2023 GFF2024 GFF2025
complex community Community=arabino-guar; Passage=4 +0.2 -0.6 -0.8 +0.3 -1.6
complex community Community=Locust bean gum; Passage=4 -0.1 -0.1 -0.6 -0.8 -0.9
complex community Community=arabino-guar; Passage=4 +0.1 +0.0 -0.7 -0.0 -1.3
complex community Community=arabino-guar; Passage=4 +0.1 -0.6 -0.8 +0.6 -0.8
complex community Community=Locust bean gum; Passage=4 +0.1 -0.7 -0.4 +0.3 -0.5
complex community Community=Locust bean gum; Passage=4 +0.5 -0.3 -0.2 +0.1 -1.3
phage phage_bap4 -0.0 +0.1 -0.7 -0.3 -0.2
complex community Community=Locust bean gum; Passage=1 -0.0 +0.0 -0.2 -0.2 -0.6
complex community Community=arabino-guar; Passage=4 -0.4 -0.0 -0.5 +0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.1 +0.0 -0.5 +0.2 -0.4
no phage control no phage control -0.0 +0.0 -0.4 -0.4 +0.1
phage phage_bap4 +0.0 -0.1 -0.5 -0.1 +0.1
complex community Community=guar; Passage=4 +0.2 -0.2 -0.5 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.2 -0.1 +0.1 -0.4
phage phage_bap4 +0.2 -0.0 -0.5 -0.1 -0.1
phage phage_bap4 -0.1 -0.1 -0.4 -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.0 +0.2 -0.2 -0.3
no phage control no phage control -0.0 -0.1 -0.5 +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 +0.0 +0.6 -0.2 +0.2 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.1 -0.3 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.1 -0.2 +0.2 -0.2
complex community Community=Kojac gum; Passage=4 +0.6 +0.0 -0.3 -0.5 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 +0.1 -0.5 +0.1 +0.2
no phage control no phage control +0.1 +0.2 -0.4 +0.1 -0.0
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.2 -0.3 +0.0 +0.4
phage phage_bap4 -0.0 +0.2 -0.3 -0.1 +0.4
phage phage_bap4 +0.1 +0.2 -0.3 -0.2 +0.3
complex community Community=guar; Passage=4 +0.1 +0.0 +0.0 -0.4 +0.7
phage phage_bap4 +0.0 +0.1 -0.3 +0.2 +0.3
complex community Community=guar; Passage=4 +0.3 -0.1 -0.4 +0.5 +0.2
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