Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_10305	PS417_10310	PS417_10315	PS417_10320	PS417_10325
soil	soil sample 6; outgrowth in LB	-2.4	N.D.	-0.3	+0.3	N.D.
seeds	Growth on radish seeds for 72 hours	-0.6	N.D.	-0.5	-1.2	N.D.
root	root sample 6; outgrowth in LB	-1.2	N.D.	-0.1	-0.7	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	-1.3	N.D.	-0.3	-0.3	N.D.
phage moi 100	Time6-phageFRS	-1.7	N.D.	+0.2	-0.3	N.D.
phage	JP1 MOI 1	-1.0	N.D.	+0.3	-1.0	N.D.
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.7	N.D.	-0.1	+0.1	N.D.
nophagecontrol	Only library	-0.7	N.D.	-0.2	-0.8	N.D.
phage	JP1 MOI 1	-0.3	N.D.	+0.0	-1.4	N.D.
carbon source	Carbon source D-Mannitol 5 mM	-0.8	N.D.	-0.2	-0.8	N.D.
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-1.1	N.D.	+0.1	-0.6	N.D.
stress	Bacitracin 2 mg/ml	-1.0	N.D.	-0.1	-0.5	N.D.
phage	P. simiae Grant Run MOI 10	-0.7	N.D.	+0.2	-0.8	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	N.D.	-0.6	-1.0	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	+0.3	-0.7	N.D.
stress	Thallium(I) acetate 0.0625 mg/ml	-0.6	N.D.	+0.1	-0.7	N.D.
stress	Lomefloxacin 0.0001 mM	-1.3	N.D.	+0.1	-0.1	N.D.
soil	soil sample 3; outgrowth in LB	+0.7	N.D.	-0.3	-1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	N.D.	-0.3	-0.7	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	N.D.	+0.0	+0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	N.D.	+0.1	-0.7	N.D.
carbon source	L-Valine (C)	-0.6	N.D.	-0.3	+0.9	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	N.D.	-0.2	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	+0.1	+1.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.9	N.D.	-0.1	-0.6	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	N.D.	-0.0	+0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	-0.1	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	N.D.	+0.3	+0.7	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	N.D.	+0.5	+1.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+3.6	N.D.	+0.0	+0.1	N.D.