Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10300	PS417_10305	PS417_10310	PS417_10315	PS417_10320
soil	soil sample 6; outgrowth in LB	-0.1	-2.4	N.D.	-0.3	+0.3
seeds	Growth on radish seeds for 72 hours	+0.1	-0.6	N.D.	-0.5	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	-1.3	N.D.	-0.3	-0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.3	-1.7	N.D.	-0.1	+0.1
carbon source	Carbon source D-Mannitol 5 mM	-0.3	-0.8	N.D.	-0.2	-0.8
root	root sample 6; outgrowth in LB	+0.0	-1.2	N.D.	-0.1	-0.7
phage moi 100	Time6-phageFRS	-0.0	-1.7	N.D.	+0.2	-0.3
phage	JP1 MOI 1	-0.1	-1.0	N.D.	+0.3	-1.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.0	-1.1	N.D.	+0.1	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.2	N.D.	-0.6	-1.0
nophagecontrol	Only library	+0.4	-0.7	N.D.	-0.2	-0.8
phage	JP1 MOI 1	+0.5	-0.3	N.D.	+0.0	-1.4
soil	soil sample 3; outgrowth in LB	-0.2	+0.7	N.D.	-0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.9	N.D.	+0.3	-0.7
phage	P. simiae Grant Run MOI 10	+0.5	-0.7	N.D.	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.4	N.D.	+0.1	-0.8
supernatant control	Vogels_fungal_media 0.1X	-0.8	+0.4	N.D.	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.6	N.D.	-0.3	-0.7
carbon source	L-Valine (C)	+0.1	-0.6	N.D.	-0.3	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.9	N.D.	+0.0	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.8	N.D.	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.3	N.D.	+0.1	+1.1
phage	P. simiae OR Antrim MOI 10	+0.6	+0.4	N.D.	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+1.9	N.D.	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.3	N.D.	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	N.D.	-0.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.2	N.D.	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.5	N.D.	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+1.1	N.D.	+0.5	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+3.6	N.D.	+0.0	+0.1