Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01015 and PS417_01020 overlap by 20 nucleotidesPS417_01020 and PS417_01025 overlap by 4 nucleotidesPS417_01025 and PS417_01030 overlap by 4 nucleotidesPS417_01030 and PS417_01035 are separated by 99 nucleotides PS417_01015: PS417_01015 - polar amino acid ABC transporter permease, at 221,869 to 222,534 _01015 PS417_01020: PS417_01020 - glutamine ABC transporter permease, at 222,515 to 223,174 _01020 PS417_01025: PS417_01025 - glutamine ABC transporter ATP-binding protein, at 223,171 to 223,947 _01025 PS417_01030: PS417_01030 - glutamine ABC transporter substrate-binding protein, at 223,944 to 224,798 _01030 PS417_01035: PS417_01035 - ATP-binding protein, at 224,898 to 226,058 _01035
Group Condition PS417_01015 PS417_01020 PS417_01025 PS417_01030 PS417_01035
phage JP1 MOI 10 -1.2 -0.4 N.D. -2.3 +0.4
phage P. simiae Grant Run MOI 10 -0.3 -0.6 N.D. -1.4 -0.6
phage P. simiae OR Antrim MOI 10 -0.2 -0.5 N.D. -1.9 -0.3
phage JP1 MOI 1 -0.8 -0.3 N.D. -0.8 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 +0.0 N.D. -2.5 -0.1
carbon source L-Valine (C) +0.1 -0.3 N.D. -1.1 -1.0
liquid stress Scopoletin 2 mM; liquid stress +0.1 -0.3 N.D. -1.8 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.4 N.D. -1.9 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.4 N.D. -1.8 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.2 N.D. -1.8 +0.2
soil soil sample 3; outgrowth in LB +0.1 +0.5 N.D. -1.6 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 +0.8 N.D. -1.3 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +0.5 N.D. -1.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.4 N.D. -0.8 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.3 N.D. -1.0 -0.1
stress methylglyoxal 0.032 vol% +0.2 +0.6 N.D. -1.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.3 N.D. -1.3 +0.4
root root sample 6; outgrowth in LB +0.9 +0.5 N.D. -1.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.0 N.D. -0.9 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +0.4 N.D. -0.7 +0.5
phage P. simiae OR Antrim MOI 0.1 -0.4 -0.3 N.D. +1.5 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 +0.6 N.D. -0.9 +0.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.3 N.D. -0.6 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 +1.2 N.D. +0.4 -0.9
phage JP1 MOI 0.1 -0.0 -0.2 N.D. +1.7 +0.1
seeds Growth on radish seeds for 24 hours -0.1 +0.6 N.D. +1.5 -0.0
soil soil sample 5; outgrowth in LB +0.8 +0.8 N.D. +0.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +0.4 N.D. +0.6 +1.0
seeds Growth on radish seeds for 72 hours +0.3 +0.3 N.D. +1.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.1 -0.3 N.D. +3.3 +0.1
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