Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10290	PS417_10295	PS417_10300	PS417_10305	PS417_10310
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.0	-0.2	-0.3	-1.7	N.D.
soil	soil sample 6; outgrowth in LB	+0.4	+0.0	-0.1	-2.4	N.D.
phage	JP1 MOI 1	-0.7	-0.2	-0.1	-1.0	N.D.
stress	Lomefloxacin 0.0001 mM	-0.4	-0.2	-0.0	-1.3	N.D.
phage moi 100	Time6-phageFRS	+0.2	-0.2	-0.0	-1.7	N.D.
soil	soil sample 2; outgrowth in LB	-0.2	-0.4	-0.3	-0.7	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	-0.1	-0.2	-1.3	N.D.
root	root sample 6; outgrowth in LB	+0.4	-0.7	+0.0	-1.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.1	-0.3	-0.9	N.D.
phage	JP1 MOI 10	+0.4	-0.3	-0.2	-0.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.2	+0.2	-1.0	N.D.
liquid stress	Fraxetin 2 mM; liquid stress	-0.2	+0.0	+0.4	-1.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.1	+0.3	-0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.1	-0.4	-0.6	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.3	+0.1	-0.8	+0.4	N.D.
soil	soil sample 7; outgrowth in LB	-0.2	+0.3	-0.5	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.5	-1.1	N.D.
stress	Phosphomycin 0.002 mg/ml	+0.5	-0.1	+0.4	-0.8	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.1	+0.3	-0.7	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	-0.1	+0.8	+0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	+0.2	+0.8	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.1	+0.4	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.4	+0.3	+1.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.3	+0.4	+0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	-0.3	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	+0.9	+0.2	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	-0.4	+0.4	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.5	+0.4	+1.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.6	-0.1	+1.9	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	-0.2	+3.6	N.D.