Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10280 and PS417_10285 are separated by 274 nucleotidesPS417_10285 and PS417_10290 are separated by 184 nucleotidesPS417_10290 and PS417_10295 are separated by 120 nucleotidesPS417_10295 and PS417_10300 are separated by 69 nucleotides PS417_10280: PS417_10280 - chemotaxis protein, at 2,196,570 to 2,198,717 _10280 PS417_10285: PS417_10285 - sodium:proton antiporter, at 2,198,992 to 2,200,314 _10285 PS417_10290: PS417_10290 - N-acetylmuramoyl-L-alanine amidase, at 2,200,499 to 2,201,329 _10290 PS417_10295: PS417_10295 - chemotaxis protein, at 2,201,450 to 2,203,129 _10295 PS417_10300: PS417_10300 - protease, at 2,203,199 to 2,204,512 _10300
Group Condition PS417_10280 PS417_10285 PS417_10290 PS417_10295 PS417_10300
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.7 -0.1 -0.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.8 -0.1 +0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.2 -0.4 +0.0 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -0.4 -0.6 -0.1 -0.5
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.1 -0.5 -0.2 +0.2 -0.5
soil soil sample 7; outgrowth in LB -0.3 -0.2 -0.2 +0.3 -0.5
supernatant control Vogels_fungal_media 0.1X -0.2 -0.2 +0.3 +0.1 -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.6 -0.1 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 -0.5 -0.1 -0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.7 +0.2 +0.4 -0.4
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -0.2 -0.6 -0.1 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.6 -0.4 -0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.1 +0.3 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.2 +0.2 +0.6 -0.3
seeds Growth on radish seeds for 72 hours -0.2 -0.2 -0.4 +0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.4 +0.5 -0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.4 +0.8 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.4 -0.2 +0.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 -0.3 -0.1 +0.1 +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +1.0 +0.1 -0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.3 +0.5 +0.2 -0.3
phage P. simiae OR Antrim MOI 10 -0.3 +0.2 -0.2 +0.2 +0.6
phage P. simiae Grant Run MOI 0.1 +0.3 +0.5 -0.1 -0.2 +0.5
phage P. simiae ORA MOI 10 -0.1 +0.5 +0.4 +0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.9 +0.1 +0.5 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 +0.7 -0.2 +0.6 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.2 +0.5 +0.9 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +0.4 +1.0 -0.4 +0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.4 +1.1 -0.1 +0.1
phage P. simiae OR1 MOI 0.1 +0.4 +0.6 +0.7 -0.2 +0.3
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