Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10275 and PS417_10280 are separated by 25 nucleotidesPS417_10280 and PS417_10285 are separated by 274 nucleotidesPS417_10285 and PS417_10290 are separated by 184 nucleotidesPS417_10290 and PS417_10295 are separated by 120 nucleotides PS417_10275: PS417_10275 - histidine kinase, at 2,195,225 to 2,196,544 _10275 PS417_10280: PS417_10280 - chemotaxis protein, at 2,196,570 to 2,198,717 _10280 PS417_10285: PS417_10285 - sodium:proton antiporter, at 2,198,992 to 2,200,314 _10285 PS417_10290: PS417_10290 - N-acetylmuramoyl-L-alanine amidase, at 2,200,499 to 2,201,329 _10290 PS417_10295: PS417_10295 - chemotaxis protein, at 2,201,450 to 2,203,129 _10295
Group Condition PS417_10275 PS417_10280 PS417_10285 PS417_10290 PS417_10295
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.4 -0.5 +0.2 -0.4 +0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 +0.0 +0.2 -0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.2 +0.4 -0.4 -0.6 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4 -0.1 +0.4 +0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.3 -0.2 -0.2 +0.0 -0.2
seeds Growth on radish seeds for 72 hours -1.6 -0.1 +0.0 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.5 -0.8 -0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.8 +0.1 +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -0.2 +0.2 +0.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -0.3 +0.6 -0.4 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -1.2 +0.1 +0.0 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.1 -0.5 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -0.3 +0.4 -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.4 +0.4 +0.5 -0.2
phage Wcs_1 +0.7 -0.2 +0.2 -0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 +0.0 +1.0 +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 +0.0 -0.2 +0.5 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.2 -0.7 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -0.0 +0.6 +0.4 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.3 +0.4 +0.8 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 -0.4 +0.7 -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.1 -0.1 +0.1 -0.6
phage P. simiae ORA MOI 0.1 +0.8 -0.4 +0.4 -0.0 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.4 +0.9 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.1 +0.4 +1.0 -0.4
phage P. simiae OR1 MOI 0.1 -0.6 +0.4 +0.6 +0.7 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.5 -0.1 +0.2 -0.1 -0.2
phage JP1 MOI 1 +1.6 +0.0 -0.5 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.2 +0.4 +1.1 -0.1
phage P. simiae OR Antrim MOI 10 +1.3 +0.0 +0.6 +0.2 -0.1
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