Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10245	PS417_10250	PS417_10255	PS417_10260	PS417_10265
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.5	+0.3	-0.6	-0.1	-1.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-3.0	-0.2	-0.6	-0.5	+0.2
root	root sample 6; outgrowth in LB	-2.7	+0.4	+0.1	-0.4	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.3	-0.3	-0.4	-1.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	-0.2	-0.0	-0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	-0.2	+0.1	-0.7	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.7	-0.2	-0.3	+0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.3	-0.2	-0.7	-0.3	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.0	-0.6	-0.6	-0.1	+0.5
phage	P. simiae ORA MOI 0.1	-1.2	-0.2	-0.3	-0.2	-0.9
solid stress	Fraxetin 0.5 mM; solid stress	-1.5	+0.1	-0.3	-0.1	-0.8
liquid stress	Scopoletin 3 mM; liquid stress	-1.1	+0.0	+0.3	-0.1	-1.8
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-1.9	-0.1	-0.2	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.6	-0.1	-0.5	-0.4	+0.3
solid stress	Fraxetin 1 mM; solid stress	-2.0	+0.4	+0.1	-0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	+0.2	-0.5	-0.1	+0.4
phage	P. simiae Grant Run MOI 10	-1.6	-0.3	-0.2	+0.7	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.6	-0.2	-0.2	-2.1
supernatant control	Vogels_fungal_media; pH 5.5	-2.0	+0.1	+0.2	-0.2	+0.4
carbon source	L-Valine (C)	-2.0	+0.3	+0.1	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.4	-0.5	-0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.0	+0.5	-0.5	+0.7	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.1	-0.1	-0.3	+2.0
nophagecontrol	Only library	+1.2	+0.2	-0.5	+0.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.3	-0.1	+0.5	+0.9
stress	Phosphomycin 0.003 mg/ml	+1.6	+0.2	-0.2	+0.6	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	+0.5	+0.6	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	+0.0	+0.3	+1.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.8	-0.5	-0.1	-0.0	+1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.1	-0.3	+0.3	+2.6