Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10230	PS417_10235	PS417_10240	PS417_10245	PS417_10250
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.5	-3.7	-0.2
root	root sample 6; outgrowth in LB	N.D.	-0.4	-0.4	-2.7	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.0	+0.1	-3.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.3	-2.3	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.0	+0.0	-2.3	-0.2
motility	outer cut, LB soft agar motility assay	N.D.	-0.2	-0.0	-2.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.3	-1.9	+0.2
solid stress	Fraxetin 1 mM; solid stress	N.D.	-0.2	-0.3	-2.0	+0.4
phage	P. simiae Grant Run MOI 10	N.D.	+0.1	-0.3	-1.6	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	-0.7	-1.7	-0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	-0.0	+0.1	-1.9	-0.1
phage	P. simiae OR1 MOI 0.1	N.D.	+0.2	-0.7	-0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.2	-2.5	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.1	+0.7	-2.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.0	-2.0	+0.5
motility	inner cut, LB soft agar motility assay	N.D.	+0.0	-0.4	-1.6	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.2	-0.2	-1.7	+0.0
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.3	-0.0	-2.0	+0.1
soil	soil sample 2; outgrowth in LB	N.D.	+0.1	+0.3	-1.7	+0.1
carbon source	L-Valine (C)	N.D.	-0.0	+0.5	-2.0	+0.3
solid stress	Fraxetin 2 mM; solid stress	N.D.	+0.1	+0.3	-1.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.5	-1.5	-0.0
stress	methylglyoxal 0.032 vol%	N.D.	+0.4	+0.8	-1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.3	+1.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.3	+1.1	+0.4
stress	Phosphomycin 0.003 mg/ml	N.D.	-0.1	+0.4	+1.6	+0.2
soil	soil sample 3; outgrowth in LB	N.D.	+0.2	+0.4	+1.2	+0.2
solid stress	80% Methanol 2 mM; solid stress	N.D.	-0.0	+0.2	+1.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.4	+0.9	+0.4
stress	Nalidixic 0.015 mg/ml	N.D.	+0.1	+0.2	+2.0	+0.2