Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10215	PS417_10220	PS417_10225	PS417_10230	PS417_10235
root	root sample 6; outgrowth in LB	-1.0	-1.4	+0.0	N.D.	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.8	-0.7	N.D.	-0.1
stress	Gentamicin 0.008 mg/ml	-0.1	-1.8	+0.5	N.D.	-0.1
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.4	-1.3	-0.2	N.D.	-0.2
liquid stress	80% Methanol 3 mM; liquid stress	-0.4	-0.6	-0.5	N.D.	+0.3
phage	P. simiae ORA MOI 0.1	+0.1	+0.8	-1.0	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	-1.0	+0.7	-0.1	N.D.	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-1.3	+0.3	N.D.	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+1.0	-0.6	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.7	+0.8	N.D.	-0.2
stress	methylglyoxal 0.032 vol%	+0.6	-0.8	-0.2	N.D.	+0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.0	+0.5	-0.8	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.1	-0.5	-0.2	N.D.	+0.1
soil	soil sample 4; outgrowth in LB	+0.2	+1.7	-0.8	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+1.4	-0.0	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+1.2	-0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+1.5	-0.1	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	+1.5	+0.2	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+1.1	+0.6	N.D.	-0.2
seeds	Growth on radish seeds for 72 hours	+0.4	+0.2	+0.5	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.9	+0.7	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+1.1	+0.6	N.D.	-0.0
soil	soil sample 8; outgrowth in LB	+0.6	+1.3	+0.2	N.D.	-0.1
soil	soil sample 5; outgrowth in LB	+0.1	+2.3	-0.1	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+1.7	+0.4	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	+1.6	+0.4	N.D.	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	+2.1	+0.3	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+1.7	+0.0	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+2.5	+0.1	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+2.5	+0.4	N.D.	-0.0