Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_10210 and PS417_10215 overlap by 1 nucleotidesPS417_10215 and PS417_10220 are separated by 5 nucleotidesPS417_10220 and PS417_10225 are separated by 56 nucleotidesPS417_10225 and PS417_10230 are separated by 198 nucleotides PS417_10210: PS417_10210 - hypothetical protein, at 2,185,125 to 2,185,640 _10210 PS417_10215: PS417_10215 - hypothetical protein, at 2,185,640 to 2,185,930 _10215 PS417_10220: PS417_10220 - hypothetical protein, at 2,185,936 to 2,186,181 _10220 PS417_10225: PS417_10225 - chitinase, at 2,186,238 to 2,186,771 _10225 PS417_10230: PS417_10230 - hypothetical protein, at 2,186,970 to 2,187,203 _10230
Group Condition PS417_10210 PS417_10215 PS417_10220 PS417_10225 PS417_10230
root root sample 6; outgrowth in LB -0.6 -1.0 -1.4 +0.0 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.0 -0.2 -0.8 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -0.4 -1.0 -0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.7 +0.2 -1.3 -0.0 N.D.
stress Gentamicin 0.008 mg/ml -0.3 -0.1 -1.8 +0.5 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 +0.4 -1.3 -0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x -0.6 +0.2 -1.3 +0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x -0.5 +0.0 -1.3 +0.3 N.D.
phage JP1 MOI 10 -0.9 -0.8 +0.8 +0.1 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.2 -0.8 -0.7 N.D.
phage P. simiae ORA MOI 0.1 +0.4 +0.1 +0.8 -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.0 +0.1 +1.4 -0.0 N.D.
phage JP1 MOI 10 -0.7 +0.1 +0.3 +1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +0.4 +0.6 -0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.8 -0.4 +1.1 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 -0.2 +1.5 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.2 +0.9 +0.7 N.D.
soil soil sample 4; outgrowth in LB +0.8 +0.2 +1.7 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 -0.4 +1.5 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +0.3 +0.6 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +0.3 +1.2 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.2 +1.1 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.8 +1.7 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.7 +0.4 +1.6 +0.4 N.D.
soil soil sample 8; outgrowth in LB +0.9 +0.6 +1.3 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.8 +0.1 +1.7 +0.4 N.D.
soil soil sample 5; outgrowth in LB +0.8 +0.1 +2.3 -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +0.8 +0.1 +2.1 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X +1.1 +0.2 +2.5 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +0.3 +2.5 +0.4 N.D.
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