Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_00090 and PS417_00095 are separated by 69 nucleotidesPS417_00095 and PS417_00100 are separated by 135 nucleotidesPS417_00100 and PS417_00110 are separated by 1212 nucleotidesPS417_00110 and PS417_00115 are separated by 130 nucleotides PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982 _00090 PS417_00095: PS417_00095 - peptide deformylase, at 21,052 to 21,558 _00095 PS417_00100: PS417_00100 - peptidoglycan-binding protein, at 21,694 to 22,470 _00100 PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240 _00110 PS417_00115: PS417_00115 - quinone oxidoreductase, at 24,371 to 25,348 _00115
Group Condition PS417_00090 PS417_00095 PS417_00100 PS417_00110 PS417_00115
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.3 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. -0.4
phage P. simiae OR Antrim MOI 1 N.D. N.D. -0.3 N.D. -0.8
seeds Growth on radish seeds for 72 hours N.D. N.D. -0.6 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.4 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.5 N.D. -0.5
stress Cisplatin 0.01 mg/ml N.D. N.D. -0.6 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 N.D. -0.4
phage JP1 MOI 1 N.D. N.D. -0.6 N.D. -0.3
soil soil sample 3; outgrowth in LB N.D. N.D. -0.7 N.D. -0.2
motility outer cut, LB soft agar motility assay N.D. N.D. -0.8 N.D. -0.1
phage Wcs_1 N.D. N.D. -0.1 N.D. -0.8
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.5 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.6 N.D. -0.2
motility outer cut, LB soft agar motility assay N.D. N.D. -0.3 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.2 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-tyrosine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.3 N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.5 N.D. +0.3
phage JP1 MOI 1 N.D. N.D. -0.6 N.D. +0.4
stress methylglyoxal 0.032 vol% N.D. N.D. -0.4 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.4 N.D. +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.7 N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.7 N.D. -0.2
phage P. simiae ORA MOI 1 N.D. N.D. +0.7 N.D. -0.1
phage JP1 MOI 0.1 N.D. N.D. +0.7 N.D. +0.1
solid stress Fraxetin 1 mM; solid stress N.D. N.D. +0.4 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.2 N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.5 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.4 N.D. +0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.1 N.D. +0.9
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