Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10155	PS417_10160	PS417_10165	PS417_10170	PS417_10175
soil	soil sample 3; outgrowth in LB	N.D.	+0.0	-0.5	-0.8	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.5	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.1	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.2	-0.5	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-0.4	-0.2	+0.1	-0.6
phage	JP1 MOI 0.1	N.D.	+0.1	-0.2	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.5	-0.4	-0.3
phage	JP1 MOI 1	N.D.	-0.3	-0.1	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.0	-0.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	-0.4	+0.3	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.6	-0.6	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.2	-0.4	-0.7	+0.2
nitrogen source	Inosine (N)	N.D.	+0.2	-0.4	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.0	-0.5	+0.6	-0.4
phage	P. simiae OR1 MOI 0.1	N.D.	-0.7	+0.4	+0.1	+0.0
phage	JP1 MOI 10	N.D.	+0.1	+0.3	+0.3	-0.8
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	-0.3	+0.1	-0.3	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.3	-0.4	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.3	+1.1	-0.3
soil	soil sample 6; outgrowth in LB	N.D.	+0.4	-0.6	+0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.2	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.7	-0.1	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-0.7	+0.3	+0.4	+0.7
carbon source	L-Valine (C)	N.D.	-0.2	+0.6	-0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.3	+0.9	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.0	+0.2	-0.3	+0.9
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.4	-0.1	-0.1	+0.7
carbon source	2-Deoxy-D-Ribose 10 mM (C)	N.D.	+0.2	+0.3	+0.4	+0.4
root	root sample 6; outgrowth in LB	N.D.	-0.5	-0.5	+1.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.5	+0.9	+0.9