Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10140	PS417_10145	PS417_10150	PS417_10155	PS417_10160
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-2.8	+0.0	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.1	+0.4	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.4	-0.3	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-1.4	+0.1	N.D.	-0.2
phage	P. simiae ORA MOI 10	N.D.	-0.6	-0.4	N.D.	-0.5
soil	soil sample 2; outgrowth in LB	N.D.	-1.2	-0.3	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.4	-0.1	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.5	+0.1	N.D.	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.7	-0.1	N.D.	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.9	-0.2	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.1	+0.1	N.D.	-0.2
phage	P. simiae ORA MOI 0.1	N.D.	-0.9	-0.1	N.D.	+0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	N.D.	-0.8	+0.2	N.D.	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.6	-0.3	N.D.	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.9	-0.0	N.D.	+0.3
phage	P. simiae OR1 MOI 0.1	N.D.	+0.6	-0.5	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	+0.4	N.D.	-0.3
soil	soil sample 6; outgrowth in LB	N.D.	-0.5	-0.2	N.D.	+0.4
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.6	-0.1	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.6	-0.1	N.D.	+0.7
motility	inner cut, LB soft agar motility assay	N.D.	-0.7	+0.2	N.D.	+0.5
root	root sample 6; outgrowth in LB	N.D.	+0.6	+0.0	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	-0.0	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.3	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.3	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	N.D.	+1.5	-0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.8	+0.3	N.D.	-0.2
liquid stress	80% Methanol 3 mM; liquid stress	N.D.	+0.6	-0.0	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.1	-0.4	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	+0.1	N.D.	+0.4