Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10095	PS417_10100	PS417_10105	PS417_10110	PS417_10120
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-0.7	+0.5	+0.0	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.8	-0.2	-0.6	-0.2
phage	Wcs_1	-1.2	-0.8	+0.0	-0.2	-0.2
phage	JP1 MOI 1	-0.6	-0.9	+0.2	-0.4	-0.4
seeds	Growth on radish seeds for 72 hours	-1.1	-0.9	+0.2	-0.4	+0.3
ecofab	LB 0.5x in EcoFAB_3.5mL	-0.8	+0.3	-0.5	-0.4	-0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-2.3	+0.7	-0.2	-0.3	+0.2
carbon source	L-Leucine (C)	-1.0	+0.4	-0.2	-0.4	-0.6
phage	P. simiae OR1 MOI 0.1	+1.0	-0.5	-0.8	-0.5	-0.6
stress	methylglyoxal 0.032 vol%	-2.5	-0.0	+0.6	+0.2	+0.3
carbon source	L-Valine (C)	-0.4	+0.2	-1.0	+0.5	-0.5
no stress control on plate	growth on LB_noSalt plate	-1.1	+0.3	+0.3	-0.2	-0.6
root	root sample 6; outgrowth in LB	-0.7	-0.4	-0.3	+1.0	-0.1
seeds	Growth on radish seeds for 72 hours	+0.5	-1.8	+0.3	+0.3	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	+0.9	-0.8	-0.0	+0.3
soil	soil sample 5; outgrowth in LB	-0.5	-0.8	-0.1	+0.8	+0.4
phage	P. simiae ORA MOI 0.1	-0.4	-0.3	-0.0	-0.7	+1.4
phage	JP1 MOI 0.1	-0.5	+1.2	+0.4	-0.1	-1.0
soil	soil sample 2; outgrowth in LB	+0.7	-0.6	+0.1	+0.7	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+1.5	-0.2	+0.1	-0.3
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.9	-0.8	+0.5	+0.2	-0.2
soil	soil sample 7; outgrowth in LB	+1.2	+0.2	-0.7	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.5	+0.8	+0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.1	-0.8	+0.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+1.2	-0.1	+0.1	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.5	+1.2	-0.0	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.7	-1.0	+0.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	+0.4	-0.3	-0.5	+0.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.8	+0.6	-0.1	+1.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.2	+0.3	+0.0	-0.0	+0.3