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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1977 and GFF1978 are separated by 87 nucleotides
GFF1978 and GFF1979 are separated by 182 nucleotides
GFF1979 and GFF1980 are separated by 3 nucleotides
GFF1980 and GFF1981 are separated by 25 nucleotides
GFF1977 - L-asparaginase (EC 3.5.1.1), at 19,324 to 20,394
GFF1977
GFF1978 - putative membrane-associated phospholipid phosphatase, PAP2 superfamily, at 20,482 to 21,294
GFF1978
GFF1979 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 21,477 to 22,385
GFF1979
GFF1980 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 22,389 to 24,533
GFF1980
GFF1981 - no description, at 24,559 to 24,888
GFF1981
Group
Condition
GFF1977
GFF1978
GFF1979
GFF1980
GFF1981
complex community
Community=Locust bean gum; Passage=4
-0.0
-1.3
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
-0.0
-1.0
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.2
-1.1
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
-0.8
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.9
+0.3
N.D.
N.D.
N.D.
phage
phage_bap4
-0.1
-0.4
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.2
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
-0.4
N.D.
N.D.
N.D.
phage
phage_bap4
-0.2
-0.1
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
-0.2
N.D.
N.D.
N.D.
no phage control
no phage control
-0.0
-0.3
N.D.
N.D.
N.D.
phage
phage_bap4
-0.3
+0.2
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.3
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
-0.2
N.D.
N.D.
N.D.
complex community
Community=Kojac gum; Passage=4
+0.4
-0.4
N.D.
N.D.
N.D.
phage
phage_bap4
-0.1
+0.2
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.2
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
-0.1
N.D.
N.D.
N.D.
no phage control
no phage control
-0.1
+0.2
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.1
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
N.D.
N.D.
N.D.
phage
phage_bap4
+0.1
+0.3
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.1
+0.7
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.4
+0.3
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.6
N.D.
N.D.
N.D.
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