Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_10060	PS417_10065	PS417_10070	PS417_10075	PS417_10080
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.8	-0.3	-0.6	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.8	-0.4	+0.0	-0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	-0.3	-0.1	-0.3	-0.4
carbon source	L-Valine (C)	-0.5	-0.3	-0.6	-0.3	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	-0.3	-0.4	+0.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.1	-0.3	-0.1	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	-0.4	+0.1	+0.0	-0.2
nophagecontrol	TIme6-nophage	-1.4	+0.3	-0.3	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.3	-0.0	-0.1	-0.4
motility	inner cut, LB soft agar motility assay	-1.2	-0.2	+0.3	+0.0	+0.0
ecofab	LB 0.5x in EcoFAB_3.5mL	-1.0	+0.2	-0.1	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	+0.2	+0.0	+0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	+0.2	-0.2	+0.1	+0.0
nophagecontrol	Only library	-0.9	-0.3	+0.3	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	+0.1	+0.5	-0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	+0.0	+0.7	+0.1	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.6	-0.3	+0.1	-0.0
soil	soil sample 8; outgrowth in LB	+0.6	-0.3	-0.5	+0.1	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+1.0	-0.2	-0.4	-0.4	-0.4
soil	soil sample 5; outgrowth in LB	-0.6	+0.5	-0.4	+0.1	+0.1
stress	R2A with Fusaric 120 ug/mL	+0.7	-0.3	-0.1	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	-0.2	-0.4	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.9	-0.5	-0.5	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.2	+0.6	+0.3	+0.2
phage	JP1 MOI 10	+0.8	+0.2	-0.2	+0.2	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.8	+0.3	-0.3	-0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.6	-0.3	+0.3	+0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.2	-0.0	+0.0	+0.3
stress	LB_noSalt with Chloride 1100 mM	+0.9	+0.4	+0.3	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.9	+0.6	-0.1	-0.2	-0.3