Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1969 and GFF1970 are separated by 64 nucleotidesGFF1970 and GFF1971 are separated by 75 nucleotidesGFF1971 and GFF1972 are separated by 17 nucleotidesGFF1972 and GFF1973 overlap by 4 nucleotides GFF1969 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 11,992 to 12,828 GFF1969 GFF1970 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 12,893 to 13,876 GFF1970 GFF1971 - Creatinine amidohydrolase (EC 3.5.2.10), at 13,952 to 14,815 GFF1971 GFF1972 - Cytosine deaminase (EC 3.5.4.1), at 14,833 to 16,110 GFF1972 GFF1973 - NAD(P)H oxidoreductase YrkL @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 16,107 to 16,694 GFF1973
Group Condition GFF1969 GFF1970 GFF1971 GFF1972 GFF1973
complex community Community=Locust bean gum; Passage=4 +0.3 -0.3 -3.9 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 -0.4 -0.0 -2.1 N.D. -0.2
complex community Community=arabino-guar; Passage=4 +0.5 +0.2 -2.9 N.D. -0.2
complex community Community=guar; Passage=4 -0.3 +0.0 -1.5 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 -0.6 -0.1 -1.1 N.D. +0.0
complex community Community=arabino-guar; Passage=4 -0.8 +0.3 -0.5 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.2 -0.3 N.D. +0.1
complex community Community=arabino-guar; Passage=4 +0.3 +0.3 -0.7 N.D. -0.6
complex community Community=Kojac gum; Passage=1 -0.3 +0.0 -0.5 N.D. -0.0
complex community Community=Kojac gum; Passage=4 -0.6 -0.3 +0.4 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.1 -0.6 N.D. +0.4
complex community Community=guar; Passage=4 -0.7 -0.2 +0.4 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.0 -0.5 N.D. +0.1
complex community Community=Locust bean gum; Passage=1 +0.3 +0.2 -1.0 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 -0.3 -0.1 +0.7 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.3 -0.2 N.D. +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.2 +0.1 N.D. +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.2 +0.4 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.1 +0.4 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.4 -0.1 -0.2 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.0 +0.3 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.0 +0.7 N.D. +0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.0 +0.7 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.1 +0.6 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.1 +0.5 N.D. +0.2
phage phage_bap4 -0.0 +0.1 +0.6 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 +0.0 +0.5 N.D. +0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 -0.0 +0.5 N.D. +0.1
complex community Community=guar; Passage=4 +0.4 -0.0 +1.1 N.D. -0.1
no phage control no phage control +0.1 -0.1 +1.4 N.D. +0.2
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