Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00975	PS417_00985	PS417_00990	PS417_00995	PS417_01000
agar plate interaction control	Taped volatile agar plate with no fungus	-0.9	+0.0	-1.0	-1.7	-0.1
motility	inner cut, LB soft agar motility assay	-1.9	-0.9	-0.5	+0.2	+0.1
soil	soil sample 3; outgrowth in LB	-0.4	-0.3	-0.2	-2.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.0	-0.7	-2.1	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.6	-0.4	+0.2	-0.6	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.0	-0.4	-0.3	-0.0	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	-0.6	+0.1	-0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	+0.1	+0.4	-0.2	-0.9
stress	Gentamicin 0.008 mg/ml	-0.8	+0.0	+0.3	-1.8	+0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.3	+0.3	+0.0	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.6	-0.9	-0.3	+0.1
carbon source	Carbon source D-Mannitol 5 mM	+0.5	+0.2	-0.3	-1.0	-0.4
stress	methylglyoxal 0.032 vol%	-0.6	-0.3	+0.3	+0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	-0.3	-0.0	+0.5	+0.4
phage	P. simiae OR1 MOI 0.1	-1.2	-0.7	-0.6	+2.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.1	+0.5	-0.7	+1.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.3	+0.1	-0.0	+0.8	+0.3
soil	soil sample 7; outgrowth in LB	+0.7	-1.0	+0.4	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.5	+0.6	-0.0	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.2	-0.4	-0.3	+0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.2	+0.5	+0.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	+0.9	-0.0	+0.9	+0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.6	-0.6	-0.1	+1.0	+0.3
phage	Wcs_1	+1.4	-0.4	+0.2	+0.4	+0.2
seeds	Growth on radish seeds for 72 hours	+2.2	-0.7	+0.9	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.6	+0.4	+1.5	+0.3
soil	soil sample 4; outgrowth in LB	+1.6	+0.2	-0.2	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.1	+0.8	+0.9	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+1.5	-0.2	+0.2	+1.4	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	+0.1	-0.6	+1.5	+0.3