Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_09970	PS417_09975	PS417_09980	PS417_09985	PS417_09990
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.4	-0.3	N.D.	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.5	-0.6	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.3	-0.2	N.D.	N.D.
phage	Wcs_1	-0.2	-0.5	-0.4	N.D.	N.D.
stress	methylglyoxal 0.032 vol%	+0.1	-0.5	-0.7	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.3	-0.3	N.D.	N.D.
phage	JP1 MOI 0.1	-0.1	-0.2	-0.7	N.D.	N.D.
soil	soil sample 4; outgrowth in LB	-0.3	-0.2	-0.5	N.D.	N.D.
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.0	-0.6	-0.4	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	-0.5	-0.4	N.D.	N.D.
seeds	Growth on radish seeds for 72 hours	+0.2	-0.7	-0.4	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.8	+0.1	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	-1.0	+0.4	N.D.	N.D.
carbon source	Carbon source D-Mannitol 10 mM	+0.3	-0.4	-0.4	N.D.	N.D.
soil	soil sample 3; outgrowth in LB	-0.3	+0.2	-0.4	N.D.	N.D.
carbon source	L-Valine (C)	+0.2	-0.9	+0.4	N.D.	N.D.
soil	soil sample 2; outgrowth in LB	-0.2	+0.5	-0.5	N.D.	N.D.
soil	soil sample 8; outgrowth in LB	+0.3	+0.2	-0.7	N.D.	N.D.
phage	P. simiae Grant Run MOI 0.1	+0.2	+0.3	-0.6	N.D.	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	+0.5	-0.5	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.4	-0.7	N.D.	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.5	-0.0	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.8	-0.2	N.D.	N.D.
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+1.0	-0.4	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.3	+0.5	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.1	+0.9	N.D.	N.D.
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.2	+0.5	+0.3	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.7	+0.3	N.D.	N.D.
phage	P. simiae ORA MOI 0.1	+0.5	+0.6	+0.2	N.D.	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	+1.6	-0.2	N.D.	N.D.